Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001797`

染色体: Chr08 坐标: 15143406-15154862 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001797`
名称	SmilChr08G001797
描述	prolyl 4-hydroxylase 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	15143406 - 15154862 / `+`

ID 对照

NCBI Gene ID	`LOC131001341`
GeneID	`131001341`
locus_tag	`-`
NCBI Name	`LOC131001341`
原始查询	`LOC131001341`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	prolyl 4-hydroxylase 1-like
产物	prolyl 4-hydroxylase 1-like
Arabidopsis	`AT2G43080` (AT-P4H-1) P4H isoform 1 [Source:NCBI gene (formerly Entrezgene);Acc:818910] identity=68.9; qcov=1.02; evalue=7.82e-147; confidence=high
Rice	`Os04g0346000` - identity=69.1; qcov=1; evalue=3.14e-146; confidence=high
GO	GO:0004656 (procollagen-proline 4-dioxygenase activity); GO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0008194 (UDP-glycosyltransferase activity); GO:0018401 (peptidyl-proline hydroxylation to 4-hydroxy-L-proline); GO:0031418 (L-ascorbic acid binding)
KEGG	-
Pfam	PF00201 (UDPGT); PF03171 (2OG-FeII_Oxy); PF13640 (2OG-FeII_Oxy_3)
InterPro	-
eggNOG	-
NR	GeneID:131001341

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057783688.1`
2	Cytoplasm	细胞质	0.80000	`XP_057783688.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057783689.1`
4	Golgi apparatus	高尔基体	0.60000	`XP_057783689.1`
5	Nucleus	细胞核	0.00000	`XP_057783688.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:15144447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B27,B28,B88,B91,C41
`Chr8:15144564`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B133
`Chr8:15144564`	`AT`	`A`	1bp_deletion	CDS_variant	1	B133
`Chr8:15144711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,D3
`Chr8:15144852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr8:15144868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,B57
`Chr8:15154245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783688.1

459 aa

230

459

UDPGT

PF00201 UDPGT 254-385 aa

XP_057783689.1

278 aa

139

278

2OG-FeII_Oxy

2OG-FeII_Oxy_3

PF03171 2OG-FeII_Oxy 159-273 aa PF13640 2OG-FeII_Oxy_3 161-273 aa

XP_057783690.1

278 aa

139

278

2OG-FeII_Oxy_3

2OG-FeII_Oxy

PF13640 2OG-FeII_Oxy_3 162-273 aa PF03171 2OG-FeII_Oxy 165-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783688.1`	Pfam	`PF00201`	UDPGT	Family	254	385	6.5e-25	88.6	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057783689.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	159	273	9.8e-11	42.6	2OG-Fe(II) oxygenase superfamily
`XP_057783689.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	161	273	1.4e-17	65.2	2OG-Fe(II) oxygenase superfamily
`XP_057783690.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	162	273	5.2e-17	63.3	2OG-Fe(II) oxygenase superfamily
`XP_057783690.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	165	273	1.4e-09	38.9	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009093904.1
TCAATGATAGATAGTTAGCTATCAATTAAAATTAATAACTATAAAAACAATTGTACATCCAAATTAATAATACACAAAAAAATTAAAATATATTCTGTCAATCATATAAGAAAGTATTGCATTTTTCATTTTCGTTCATCCCATAAAAAAATATGAAGTTCATTTTTGGACATGATTCTATTTTCTCCTTTAAACCACAATCATTCATTTGTTCATAACCTCATAATCAATTCAACCAAAACAGCATTGTGTATCAATAT...

XR_009093903.1
TCAATGATAGATAGTTAGCTATCAATTAAAATTAATAACTATAAAAACAATTGTACATCCAAATTAATAATACACAAAAAAATTAAAATATATTCTGTCAATCATATAAGAAAGTATTGCATTTTTCATTTTCGTTCATCCCATAAAAAAATATGAAGTTCATTTTTGGACATGATTCTATTTTCTCCTTTAAACCACAATCATTCATTTGTTCATAACCTCATAATCAATTCAACCAAAACAGCATTGTGTATCAATAT...

CDS

3 records

下载 CDS FASTA

LOC131001341
ATGGCGGAGCAGCACATCCTACTAGTTACCTTCCCGGCTCAGGGCCACATCAACCCATCTCTCCAGTTCGCTAAACACCTCGCCAAACACGGCGTTAAGGTCACCATCCTCACCAGCACCTACGCCACCGCCCGCATGTCCCACACTCTCTCTCCATCCTTCCAACCCCTAATCGACGTCGTTTCCTTCTCCTCCACCACCGACTGGTCCACAGAAGACGCCACCAAACTCATGCAACAGCTCTCCGACTTCGGCACCAA...

LOC131001341
ATGGCTGCTTCTTCGATGAGATTCATCTTCATTATCCTTACGTTCGTAACTGTTGGAATGATTTTCGGAGCTTTGCTTCAGTTGGCATTTATTAGAAGGTTGGAGGAGTCATCTGGGGCCAAGTCTTCTTTGACAAGAATTCAGCATCTGAATGGAGGTATTTCTTATTGGGATGACAAAGAAGCTTCAGTTTTGCGTCTTGGATATGTAAAACCTGAAGTTGTCAGCTGGTCACCACGTATTGTTGTGTTTCATAACTT...

Protein

3 records

下载 Protein FASTA

XP_057783688.1
MAEQHILLVTFPAQGHINPSLQFAKHLAKHGVKVTILTSTYATARMSHTLSPSFQPLIDVVSFSSTTDWSTEDATKLMQQLSDFGTKAVEDAVAAKRAQGTPYTRIVYNLLVPWAGRAARRLAVPVTLLWIQPAVLFGVYFHYHNRNFDPCSDEVIELPGLPRLRRCDLPSFFLETNPSVYNFAIPMLTENFEILDQEDHATVVLNTFDKLEADALRYLNKYRLLAIGPLIPSAFLDARDPSDTSFGGDLIQKSEDYMQY...

XP_057783689.1
MAASSMRFIFIILTFVTVGMIFGALLQLAFIRRLEESSGAKSSLTRIQHLNGGISYWDDKEASVLRLGYVKPEVVSWSPRIVVFHNFLSDEECDYLRAISKPRLEVSTVVDARTGKGIKSKVRTSSGMFLTAEERKFPMIQAIEKRISVYAQVPVENGERIQVLRYEKNQFYRPHHDYFSDTFNLKYGGQRVGTVLMYLSDNVEGGETYFPKAGSGECSCGGKMAKGLCVKPIKGDAVLFWSMGLDGKSDPNSLHGGCEV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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