Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001798`

染色体: Chr08 坐标: 15156882-15160959 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001798`
名称	SmilChr08G001798
描述	uncharacterized SmilChr08G001798
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	15156882 - 15160959 / `+`

ID 对照

NCBI Gene ID	`LOC131001342`
GeneID	`131001342`
locus_tag	`-`
NCBI Name	`LOC131001342`
原始查询	`LOC131001342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U3 containing 90S pre-ribosomal complex subunit [Source:NCBI gene (formerly Entrezgene);Acc:818913]; symbol=AT2G43110; hit=AT2G43110; species=arabidopsis; confidence=high
产物	U3 containing 90S pre-ribosomal complex subunit [Source:NCBI gene (formerly Entrezgene);Acc:818913]; symbol=AT2G43110; hit=AT2G43110; species=arabidopsis; confidence=high
Arabidopsis	`AT2G43110` (AT2G43110) U3 containing 90S pre-ribosomal complex subunit [Source:NCBI gene (formerly Entrezgene);Acc:818913] identity=52.7; qcov=0.844; evalue=5.63e-71; confidence=high
Rice	`Os04g0348100` - identity=57.8; qcov=0.658; evalue=2.66e-63; confidence=high
GO	GO:0005634 (nucleus); GO:0030686 (90S preribosome)
KEGG	-
Pfam	PF14617 (CMS1)
InterPro	-
eggNOG	-
NR	GeneID:131001342

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783691.1`
2	Nucleolus	核仁	1.00000	`XP_057783691.1`
3	Nucleolus rim	Nucleolus rim	0.40000	`XP_057783691.1`
4	Nucleoplasm	核质	0.20000	`XP_057783691.1`
5	Chromosome	染色体	0.00000	`XP_057783691.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:15158134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,D6
`Chr8:15158154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783691.1

290 aa

145

290

CMS1

PF14617 CMS1 25-272 aa

XP_057783692.1

263 aa

132

263

CMS1

PF14617 CMS1 25-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783691.1`	Pfam	`PF14617`	CMS1	Family	25	272	4.8e-32	112.0	U3-containing 90S pre-ribosomal complex subunit
`XP_057783692.1`	Pfam	`PF14617`	CMS1	Family	25	250	2.2e-30	106.6	U3-containing 90S pre-ribosomal complex subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093905.1
ATCAATTTTTTTTTTTTTTTATGAGCACCACTTTCCCAAGTCCCAACAAACGTTGTTTTAGGCTGAATTGAAAGACCAAGACCTACCGTTGGCAAAACAGTAACATAACAGCAGGCCCATAACCTCAACAGCTAAACAACAATGGGCACTGGTACCACCGGCTCCGTCGCCGCCGCAAAAAAGCGCCAAAAGCAGCGGCCGCAGTTGCGGCCTAAGAAATCTATTGCCAAAACCAAAACTAAGGACAAGAAGAAAAAGTC...

XM_057927708.1
TTTTTTTTTTTTTTTATGAGCACCACTTTCCCAAGTCCCAACAAACGTTGTTTTAGGCTGAATTGAAAGACCAAGACCTACCGTTGGCAAAACAGTAACATAACAGCAGGCCCATAACCTCAACAGCTAAACAACAATGGGCACTGGTACCACCGGCTCCGTCGCCGCCGCAAAAAAGCGCCAAAAGCAGCGGCCGCAGTTGCGGCCTAAGAAATCTATTGCCAAAACCAAAACTAAGGACAAGAAGAAAAAGTCGAGTA...

CDS

2 records

下载 CDS FASTA

LOC131001342
ATGGGCACTGGTACCACCGGCTCCGTCGCCGCCGCAAAAAAGCGCCAAAAGCAGCGGCCGCAGTTGCGGCCTAAGAAATCTATTGCCAAAACCAAAACTAAGGACAAGAAGAAAAAGTCGAGTAAAGATAACACTAAAAGAAATCTAAAGAAGAAGGGTTCTGAATCTGAAACCGCCGTGGTAAAGGTTGAAAGAATTCTCGTTGAACGGCCAAGCATCTCTCAGCAGTTGAGTTTTCTAATCGACCAGTATCAATCCGC...

Protein

2 records

下载 Protein FASTA

XP_057783691.1
MGTGTTGSVAAAKKRQKQRPQLRPKKSIAKTKTKDKKKKSSKDNTKRNLKKKGSESETAVVKVERILVERPSISQQLSFLIDQYQSANGVQLSSLELDSLKETCIVEQGQDTAQNNTGNLVEDLKVAFGSSWKKVLCEKHLQEGQVDPGSPALLVISLSALRSLELLRELRSLTGDCHAAKLFSKHMKIEEQVSTLKNRVNIASGTPSRIKKLIDMEALGLSRLSVIVLDMNTDVKGYSLFTLPQVRDEFWDLYRSYFHQ...

XP_057783692.1
MGTGTTGSVAAAKKRQKQRPQLRPKKSIAKTKTKDKKKKSSKDNTKRNLKKKGSESETAVVKVERILVERPSISQQLSFLIDQYQSANGVQLSSLELDSLKETCIVEQGQDTAQNNTGNLVEDLKVAFGSSWKKVLCEKHLQEGQVDPGSPALLVISLSALRSLELLRELRSLTGDCHAAKLFSKHMKIEEQVSTLKNRVNIASGTPSRIKKLIDMEALGLSRLSVIVLDMNTDVKGYSLFTLPQVRLRHMKSFSYGVLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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