Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001861`

染色体: Chr08 坐标: 15977398-15982707 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001861`
名称	SmilChr08G001861
描述	type I inositol polyphosphate 5-phosphatase 5-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	15977398 - 15982707 / `+`

ID 对照

NCBI Gene ID	`LOC131001403`
GeneID	`131001403`
locus_tag	`-`
NCBI Name	`LOC131001403`
原始查询	`LOC131001403`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type I inositol polyphosphate 5-phosphatase 5-like
产物	type I inositol polyphosphate 5-phosphatase 5-like
Arabidopsis	`AT5G65090` (BST1) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836633] identity=54.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0751900` - identity=53.2; qcov=0.978; evalue=1.02e-179; confidence=high
GO	GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF22669 (Exo_endo_phos2)
InterPro	-
eggNOG	-
NR	GeneID:131001403

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057783772.1`
2	Cytosol	细胞质基质	0.40000	`XP_057783772.1`
3	Nucleus	细胞核	0.00000	`XP_057783772.1`
4	Chromosome	染色体	0.00000	`XP_057783772.1`
5	Centromere	着丝粒	0.00000	`XP_057783772.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:15977890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr8:15977892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr8:15979610`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C9
`Chr8:15979610`	`TC`	`T`	1bp_deletion	CDS_variant	1	C9
`Chr8:15979795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B28,C16,C23,C52,C59
`Chr8:15979902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B138
`Chr8:15979918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B37
`Chr8:15979924`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B15
`Chr8:15979924`	`TA`	`T`	1bp_deletion	CDS_variant	1	B15
`Chr8:15980039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C2
`Chr8:15980041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:15980117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783772.1

507 aa

254

507

Exo_endo_phos2

PF22669 Exo_endo_phos2 135-466 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783772.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	135	466	2.7e-72	244.5	Endonuclease/Exonuclease/phosphatase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927789.1
TCACCTCCCACAAAAAAGAGCAGCCAATATTTTCAAAAGATAAAACCAGCCAATGCTGATCTGTGTATTAACCACTTACATCCACCATAATCCGAAAGACACGGCGACATAAGCTGATCATTCAACAGAAATTAATTCAAACCAAAAGTATACAAAACAATAATAAATTAAAATTTTAATTTTACTTGAAATAAACAGTAATTAAAAATAACATCGAAAAATAGCAAGGGTAAAAAAGAAACTAGTAACAAAGGAAAAAC...

CDS

1 records

下载 CDS FASTA

LOC131001403
ATGAACGAATATTCTGACCGCCGGCACGGAGGCGCTAATGTTTCCATGACGACGGCCGCCGGAAGCACCTCCGCCAGCCCCGCCTCCACCTCTGAGAATTCCGTCAGATGTGAAAAAAGAACGATTAAGTCCATAATCCCAAGGATTTTTAGTTACAAGAGATCGTACAGCAGAGATAGTTTTTCAGAGGAAGAAACCCTTCAATCAGATGGAAATAGCAATGAAAACGAATCAGATAATAATGTTACGTCAAGAACAAA...

Protein

1 records

下载 Protein FASTA

XP_057783772.1
MNEYSDRRHGGANVSMTTAAGSTSASPASTSENSVRCEKRTIKSIIPRIFSYKRSYSRDSFSEEETLQSDGNSNENESDNNVTSRTKAFLEESNFIKRGFSERHSVAEVETLTLSSFNRSMAPQTVVQNIRVFVGTWNVGGNTPDHGMNLEDFLQVEGSADLYVVGFQEIVPLNAGNVLVIEDNEPASKWLALISHALNKSKCSNMLEKQCLKAMSKNVRGECEAFKGCNCRRSRVGGDECMYQLVASKQMVGLFLSIWG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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