当前解析结果
SmilChr08G001898| 统一新 Gene ID | SmilChr08G001898 |
|---|---|
| 名称 | SmilChr08G001898 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 16486775 - 16492154 / - |
| NCBI Gene ID | LOC131001416 |
|---|---|
| GeneID | 131001416 |
| locus_tag | - |
| NCBI Name | LOC131001416 |
| 原始查询 | LOC131001416 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 |
| Arabidopsis | AT5G10290 (AT5G10290)leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830893] identity=78.8; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0283800 (TMS10)- identity=73.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001416 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783785.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783785.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783785.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783785.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783785.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:16487307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B73 |
Chr8:16487361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B40 |
Chr8:16487367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:16487681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr8:16487795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:16488376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,C76,D2 |
Chr8:16488794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr8:16488798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr8:16489008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C20,C37,D7 |
Chr8:16489391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr8:16490077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783785.1PF08263
LRRNT_2 22-61 aa
PF13855
LRR_8 66-124 aa
PF12799
LRR_4 89-128 aa
PF00560
LRR_1 90-111 aa
PF00560
LRR_1 113-135 aa
PF00560
LRR_1 137-159 aa
PF00069
Pkinase 286-557 aa
PF07714
PK_Tyr_Ser-Thr 288-559 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783785.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 22 | 61 | 5.5e-10 | 40.1 | Leucine rich repeat N-terminal domain |
XP_057783785.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 66 | 124 | 1.2e-10 | 41.8 | Leucine rich repeat |
XP_057783785.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 89 | 128 | 4.8e-09 | 36.9 | Leucine Rich repeats (2 copies) |
XP_057783785.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 90 | 111 | 2.9e-14 | 50.8 | Leucine Rich Repeat |
XP_057783785.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 113 | 135 | 2.9e-14 | 50.8 | Leucine Rich Repeat |
XP_057783785.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 137 | 159 | 2.9e-14 | 50.8 | Leucine Rich Repeat |
XP_057783785.1 |
Pfam | PF00069 |
Pkinase | Domain | 286 | 557 | 1.1e-40 | 140.4 | Protein kinase domain |
XP_057783785.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 288 | 559 | 2e-42 | 146.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。