当前解析结果
SmilChr01G004355| 统一新 Gene ID | SmilChr01G004355 |
|---|---|
| 名称 | SmilChr01G004355 |
| 描述 | ABC transporter A family member 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61729479 - 61746900 / + |
| NCBI Gene ID | LOC131001419 |
|---|---|
| GeneID | 131001419 |
| locus_tag | - |
| NCBI Name | LOC131001419 |
| 原始查询 | LOC131001419 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter A family member 1 |
| 产物 | ABC transporter A family member 1 |
| Arabidopsis | AT2G41700 (ABCA1)ATP-binding cassette A1 [Source:NCBI gene (formerly Entrezgene);Acc:818768] identity=69.1; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0398000 (OsABCA3)- identity=33; qcov=0.38; evalue=1.93e-79; confidence=low |
| GO | GO:0005319 (lipid carrier activity); GO:0005524 (ATP binding); GO:0006869 (lipid transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF12698 (ABC2_membrane_3); PF13304 (AAA_21); PF23321 (R1_ABCA1); PF26955 (ACT_13) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001419 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057783794.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057783802.1 |
| 3 | Vacuole | 液泡 | 0.60000 | XP_057783802.1 |
| 4 | Endosome | 内体 | 0.40000 | XP_057783794.1 |
| 5 | Endosome membrane | 内体膜 | 0.40000 | XP_057783794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61729805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:61730353 |
TAC |
T |
2bp_deletion | frameshift_variant | 1 | B74 |
Chr1:61730353 |
TAC |
T |
2bp_deletion | CDS_variant | 1 | B74 |
Chr1:61731181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr1:61733446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr1:61734012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr1:61734334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:61734466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B65,C52 |
Chr1:61738763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C5 |
Chr1:61738820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B65,C52 |
Chr1:61739859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B20 |
Chr1:61739959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783794.1PF12698
ABC2_membrane_3 240-483 aa
PF00005
ABC_tran 594-737 aa
PF26955
ACT_13 802-890 aa
PF12698
ABC2_membrane_3 1006-1407 aa
PF00005
ABC_tran 1499-1641 aa
PF13304
AAA_21 1546-1676 aa
PF23321
R1_ABCA1 1827-1889 aa
XP_057783802.1PF12698
ABC2_membrane_3 21-255 aa
PF00005
ABC_tran 366-509 aa
PF26955
ACT_13 574-662 aa
PF12698
ABC2_membrane_3 778-1179 aa
PF00005
ABC_tran 1271-1413 aa
PF13304
AAA_21 1319-1448 aa
PF23321
R1_ABCA1 1599-1661 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783794.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 240 | 483 | 8.4e-57 | 193.5 | ABC-2 family transporter protein |
XP_057783794.1 |
Pfam | PF00005 |
ABC_tran | Domain | 594 | 737 | 1e-60 | 205.0 | ABC transporter |
XP_057783794.1 |
Pfam | PF26955 |
ACT_13 | Domain | 802 | 890 | 2.5e-18 | 66.6 | ACT-like domain |
XP_057783794.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 1006 | 1407 | 8.4e-57 | 193.5 | ABC-2 family transporter protein |
XP_057783794.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1499 | 1641 | 1e-60 | 205.0 | ABC transporter |
XP_057783794.1 |
Pfam | PF13304 |
AAA_21 | Domain | 1546 | 1676 | 7.2e-20 | 72.9 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057783794.1 |
Pfam | PF23321 |
R1_ABCA1 | Domain | 1827 | 1889 | 6.9e-14 | 52.4 | ABCA1-like, C-terminal R1 regulatory domain |
XP_057783802.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 21 | 255 | 2.4e-57 | 195.3 | ABC-2 family transporter protein |
XP_057783802.1 |
Pfam | PF00005 |
ABC_tran | Domain | 366 | 509 | 7.2e-61 | 205.5 | ABC transporter |
XP_057783802.1 |
Pfam | PF26955 |
ACT_13 | Domain | 574 | 662 | 1.6e-18 | 67.2 | ACT-like domain |
XP_057783802.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 778 | 1179 | 2.4e-57 | 195.3 | ABC-2 family transporter protein |
XP_057783802.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1271 | 1413 | 7.2e-61 | 205.5 | ABC transporter |
XP_057783802.1 |
Pfam | PF13304 |
AAA_21 | Domain | 1319 | 1448 | 3.2e-20 | 74.0 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057783802.1 |
Pfam | PF23321 |
R1_ABCA1 | Domain | 1599 | 1661 | 5.3e-14 | 52.8 | ABCA1-like, C-terminal R1 regulatory domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。