Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001880`

染色体: Chr08 坐标: 16329148-16330943 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001880`
名称	SmilChr08G001880
描述	uncharacterized SmilChr08G001880
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16329148 - 16330943 / `+`

ID 对照

NCBI Gene ID	`LOC131001423`
GeneID	`131001423`
locus_tag	`-`
NCBI Name	`LOC131001423`
原始查询	`LOC131001423`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143]; symbol=AT4G39840; hit=AT4G39840; species=arabidopsis; confidence=high
产物	cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143]; symbol=AT4G39840; hit=AT4G39840; species=arabidopsis; confidence=high
Arabidopsis	`AT4G39840` (AT4G39840) cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143] identity=53.8; qcov=0.919; evalue=4.58e-110; confidence=high
Rice	`Os08g0411300` - identity=35.6; qcov=0.859; evalue=3.05e-60; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131001423

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057783799.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057783799.1`
3	Nucleus membrane	核膜	0.20000	`XP_057783799.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057783799.1`
5	Nucleus	细胞核	0.00000	`XP_057783799.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16329937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:16329944`	`CT`	`C`	1bp_deletion	frameshift_variant	11	A21,B108,B110,B137,B20,B54,B57,B67,B86,C30,C70
`Chr8:16329975`	`ATT`	`A`	2bp_deletion	frameshift_variant	14	A5,B10,B104,B13,B24,B63,C19,C2,C20,C40,C57,D1,D11,D8
`Chr8:16330072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B74,B77,C19,C2,C40
`Chr8:16330202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:16330375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr8:16330556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A25,B75,C50,C70
`Chr8:16330727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B40

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927816.1
GTTCATGTACAACGGAAAATCTCTTCTTTTATTTTTTTTCTTTCTGATACGAAAAAACAAGCTCATTTTTAAATAATCAATAATCTTCTTCTTCTTCTTCTGTATTTTATTTTTTGGAAATTGCAGTAATACATATTGGTAAAATGCAATTTTAGAGCGTAACACAGAAATAGTATTCGATAATGGATACAAGAGTAAACCGAAGCCTAATAATTGTATAGTTGCACTGTTGGAGCATGTGAGATGATTTCAACTGCTGT...

CDS

1 records

下载 CDS FASTA

LOC131001423
ATGGCTCCACTCCAAGAGAATTCCAGCCAAAGGAAGCAACTTGTGTGTCTGCTCCTACTTTTCATCACTCCCACATTCATTTCTGCAGCTCAGTCTCAAAATCATCACCTTTTTAGCAAAACAAGATTGCTGCTTGAGTTACAAGATGACAGCAGTGAGCCAATCATCACCACCAAAAACCAACCAAAACTCGTCAAACCACCTTCATCCAAGAACCAAACCAAAACCTCAAATCTTTCACTCAAGAATCAAACCAAACT...

Protein

1 records

下载 Protein FASTA

XP_057783799.1
MAPLQENSSQRKQLVCLLLLFITPTFISAAQSQNHHLFSKTRLLLELQDDSSEPIITTKNQPKLVKPPSSKNQTKTSNLSLKNQTKLIKTSNIKNQTKLIIKTSNIKNQTKLSIKTSNIKNQTSNLALKNQTKGSSFELIKTSPKNQTNSSADQSKIKKQHKVVVEEEEEEEDDLVSELTDLPSRFQETFLPDMERISKTSKIYLNKYNTQFTKGFKPYVGNKYASTLASVISFAFIIIPLILVSLLFSKITAYFSIQKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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