Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001899`

染色体: Chr08 坐标: 16506819-16508484 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001899`
名称	SmilChr08G001899
描述	uncharacterized SmilChr08G001899
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16506819 - 16508484 / `+`

ID 对照

NCBI Gene ID	`LOC131001431`
GeneID	`131001431`
locus_tag	`-`
NCBI Name	`LOC131001431`
原始查询	`LOC131001431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830156]; symbol=AT4G39955; hit=AT4G39955; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830156]; symbol=AT4G39955; hit=AT4G39955; species=arabidopsis; confidence=high
Arabidopsis	`AT4G39955` (AT4G39955) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830156] identity=57.8; qcov=0.993; evalue=5.02e-116; confidence=high
Rice	`Os07g0622700` (P0524E08.104) - identity=50; qcov=0.866; evalue=1.14e-77; confidence=high
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF02129 (Peptidase_S15); PF03959 (FSH1); PF08386 (Abhydrolase_4); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131001431

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057783811.1`
2	Cytosol	细胞质基质	0.40000	`XP_057783812.1`
3	Nucleus	细胞核	0.00000	`XP_057783811.1`
4	Chromosome	染色体	0.00000	`XP_057783811.1`
5	Centromere	着丝粒	0.00000	`XP_057783811.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16507336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B114
`Chr8:16507347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:16507480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr8:16507663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B6,C12
`Chr8:16507732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:16507862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr8:16508201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B31,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783811.1

308 aa

154

308

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Peptidase_S15

FSH1

Abhydrolase_4

PF12146 Hydrolase_4 48-285 aa PF00561 Abhydrolase_1 50-285 aa PF12697 Abhydrolase_6 52-284 aa PF02129 Peptidase_S15 116-279 aa PF03959 FSH1 119-281 aa PF08386 Abhydrolase_4 238-298 aa

XP_057783812.1

284 aa

142

284

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 50-156 aa PF12697 Abhydrolase_6 52-185 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783811.1`	Pfam	`PF12146`	Hydrolase_4	Domain	48	285	1.7e-10	41.3	Serine aminopeptidase, S33
`XP_057783811.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	50	285	1.6e-23	84.4	alpha/beta hydrolase fold
`XP_057783811.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	52	284	6.2e-17	63.7	Alpha/beta hydrolase family
`XP_057783811.1`	Pfam	`PF02129`	Peptidase_S15	Domain	116	279	1.4e-06	28.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057783811.1`	Pfam	`PF03959`	FSH1	Domain	119	281	2.2e-05	25.0	Serine hydrolase (FSH1)
`XP_057783811.1`	Pfam	`PF08386`	Abhydrolase_4	Family	238	298	1.5e-05	25.8	TAP-like protein
`XP_057783812.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	50	156	1.3e-14	55.2	alpha/beta hydrolase fold
`XP_057783812.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	52	185	2.6e-10	42.0	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927828.1
ACCAATGACAAAGACATATTCCAATACCCAAACGGCCAAACTACCTAATTTATTTAACGTGGCCACCGTACTATGCATTTATCTCATGCGACAAATGGCAAGTGGATCTGCCCAACTTTTTATGCAATACATAAATAAATAAGAAACTAAAAATGAATTCATGAGTGAATATTATTAATTGACGACTGTCCTTCACTTTCTCACTCAAGAAAAACATTCAACTTTCCGGCAAATCTGATCCTCCAAATTTCCACCATAAA...

XM_057927829.1
ACCAATGACAAAGACATATTCCAATACCCAAACGGCCAAACTACCTAATTTATTTAACGTGGCCACCGTACTATGCATTTATCTCATGCGACAAATGGCAAGTGGATCTGCCCAACTTTTTATGCAATACATAAATAAATAAGAAACTAAAAATGAATTCATGAGTGAATATTATTAATTGACGACTGTCCTTCACTTTCTCACTCAAGAAAAACATTCAACTTTCCGGCAAATCTGATCCTCCAAATTTCCACCATAAA...

CDS

2 records

下载 CDS FASTA

LOC131001431
ATGGCGAAGTGCTTCAGCTTCACATCATCAAGGAACCGGTGCTACCGGTGGTCCTTCTCCTCGGCCGGGCTGCGGTCCCTAACCGCCGACCTCGGCGACGGCACGGTGGTCCACAGCTGGGGACCGAAGACCCACAATCCCAGCAAGCCCACCCTGGTCCTCATACACGGCATCGGCGCCAATGCAATGTGGCAGTGGAACGAGTTCGTGTCGCCGCTGTCGGCGCGGTTCAACGTGTACGTTCCCGACCTGGTCTTCTT...

Protein

2 records

下载 Protein FASTA

XP_057783811.1
MAKCFSFTSSRNRCYRWSFSSAGLRSLTADLGDGTVVHSWGPKTHNPSKPTLVLIHGIGANAMWQWNEFVSPLSARFNVYVPDLVFFGESYTSRPERSEAFQAECVFRAMEAAGVRGRMSVVGLSYGGFVAYSMAARFPEAVERVVIGCAGVCLEERDMDEGLFKVRTVDEAIQILLAQTPDKLRELMRLSFYKPAKNVPSCFLSDFIDVMCTENLQERKELIYALHKDRKLSDLPKITQPTLIIWGEHDQVFPLELAHR...

XP_057783812.1
MAKCFSFTSSRNRCYRWSFSSAGLRSLTADLGDGTVVHSWGPKTHNPSKPTLVLIHGIGANAMWQWNEFVSPLSARFNVYVPDLVFFGESYTSRPERSEAFQAECVFRAMEAAGVRGRMSVVGLSYGGFVAYSMAARFPEAVERVVIGCAGVCLEERDMDEGLFKVRTVDEAIQILLAQTPDKLRELMRLSFYKPAKNVPSCFLSDFIDVMCTENLQERKELIYALHKDRKLSDLPKITQALGKQGRAGDPKESRARNQY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器