Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004388`

染色体: Chr01 坐标: 62048214-62054134 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004388`
名称	SmilChr01G004388
描述	uncharacterized SmilChr01G004388
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62048214 - 62054134 / `-`

ID 对照

NCBI Gene ID	`LOC131001452`
GeneID	`131001452`
locus_tag	`-`
NCBI Name	`LOC131001452`
原始查询	`LOC131001452`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831118]; symbol=TPR16; hit=AT5G12430; species=arabidopsis; confidence=medium
产物	Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831118]; symbol=TPR16; hit=AT5G12430; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G12430` (TPR16) Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831118] identity=49.8; qcov=0.474; evalue=0; confidence=medium
Rice	`Os05g0374600` (OsDjC49) - identity=47.5; qcov=0.317; evalue=4.01e-111; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00226 (DnaJ)
InterPro	-
eggNOG	-
NR	GeneID:131001452

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783830.1`
2	Nucleus membrane	核膜	0.40000	`XP_057783830.1`
3	Cytosol	细胞质基质	0.20000	`XP_057783830.1`
4	Chromosome	染色体	0.00000	`XP_057783830.1`
5	Centromere	着丝粒	0.00000	`XP_057783830.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62048491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:62048601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:62048606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:62048643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr1:62048667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:62048832`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B81
`Chr1:62048832`	`C`	`CA`	1bp_insertion	CDS_variant	1	B81
`Chr1:62048841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:62049059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:62050470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr1:62050480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:62051893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783830.1

1289 aa

644

1289

DnaJ

PF00226 DnaJ 1135-1167 aa

XP_057783836.1

1255 aa

628

1255

DnaJ

PF00226 DnaJ 1101-1133 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783830.1`	Pfam	`PF00226`	DnaJ	Domain	1135	1167	1.2e-15	58.1	DnaJ domain
`XP_057783836.1`	Pfam	`PF00226`	DnaJ	Domain	1101	1133	1.1e-15	58.2	DnaJ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927847.1
ATGTTTATGTTGAGCTTCGCTAGCCAAACACTCCGTTAATACTAGGTGATAGCAACGTTCAAATCAATCAATTCAAATATAAACCCCCAAAACCTAAACCCCAAGAAAAAGGGGCAAAAGAAAAAAAGGGCAAAATTAGAGCAAATCCAAACCCACACTCATTTTCGGCTTCTTCCCTTCCATTTGAAGCAAAGGTTTTTTTCGAGAATCCGTCCTATGTTTTCTCTGCTGACGACGACAAAATTCACCGAATAATCTCT...

XM_057927853.1
CCGTTAATACTAGGTGATAGCAACGTTCAAATCAATCAATTCAAATATAAACCCCCAAAACCTAAACCCCAAGAAAAAGGGGCAAAAGAAAAAAAGGGCAAAATTAGAGCAAATCCAAACCCACACTCATTTTCGGCTTCTTCCCTTCCATTTGAAGCAAAGGTTTTTTTCGAGAATCCGTCCTATGTTTTCTCTGCTGACGACGACAAAATTCACCGAATAATCTCTCAACTCAGACACCTAATTATACCGAAATCTAC...

CDS

2 records

下载 CDS FASTA

LOC131001452
ATGTCGCCGCCGGTGATCGCGCCGCAGCCCGCTTTCGAATTCGATAAACCCGATTCAGCTCAGAGCTCAGAATCGGGGGAGAGCTTTAATTTTTCTTCTGCTTCGACTGATGCTGCTCGATTTGATTACTCGAAAAGCGGTCCCGAGAAGCCGCGCATTTCGGGCCGATCCAGGCCGAGGTTAATGAAGATGAGGAGGCGGCAAATGCGGGACGGAAAGACTGTAAAAACTGATTTGGGGTTGAATGGGTTTAGTGATGG...

Protein

2 records

下载 Protein FASTA

XP_057783830.1
MSPPVIAPQPAFEFDKPDSAQSSESGESFNFSSASTDAARFDYSKSGPEKPRISGRSRPRLMKMRRRQMRDGKTVKTDLGLNGFSDGGGEKDFEGKLGNAFATNNGCLGSNGGEGKSRGLNENVDKFGNGFNFNVELDNSLSGFISGKFTPLFDATESTMPSKKQSKGSNFYFDKGSSNVVQMESGSFVFGACKEAPVSNPDLCEQFVFGAGAGAYSRDSSFSMKDSSDSASQVKLEQQGSHKSGLNSSADEFVKFNAVN...

XP_057783836.1
MSPPVIAPQPAFEFDKPDSAQSSESGESFNFSSASTDAARFDYSKSGPEKPRISGRSRPRLMKMRRRQMRDGKTVKTDLGLNGFSDGGGEKDFEGKLGNAFATNNGCLGSNGGKFTPLFDATESTMPSKKQSKGSNFYFDKGSSNVVQMESGSFVFGACKEAPVSNPDLCEQFVFGAGAGAYSRDSSFSMKDSSDSASQVKLEQQGSHKSGLNSSADEFVKFNAVNFEFGASKTDKVAGSTIHDVRGKVKLDGSGASEKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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