Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001912`

染色体: Chr08 坐标: 16634210-16642471 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001912`
名称	SmilChr08G001912
描述	ABC transporter G family member 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16634210 - 16642471 / `-`

ID 对照

NCBI Gene ID	`LOC131001454`
GeneID	`131001454`
locus_tag	`-`
NCBI Name	`LOC131001454`
原始查询	`LOC131001454`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter G family member 1-like
产物	ABC transporter G family member 1-like
Arabidopsis	`AT1G17840` (ABCG11) white-brown complex-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838363] identity=52.2; qcov=0.914; evalue=0; confidence=high
Rice	`Os09g0472100` (OsABCG22) - identity=60.3; qcov=0.932; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7)
InterPro	-
eggNOG	-
NR	GeneID:131001454

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057783828.1`
2	Vacuole	液泡	0.60000	`XP_057783828.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057783828.1`
4	Nucleus	细胞核	0.00000	`XP_057783828.1`
5	Chromosome	染色体	0.00000	`XP_057783828.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16634562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B82,C48
`Chr8:16634599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,B54
`Chr8:16634607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C48
`Chr8:16634715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B52,D6
`Chr8:16634778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:16634855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr8:16639268`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B49
`Chr8:16639268`	`TG`	`T`	1bp_deletion	CDS_variant	1	B49
`Chr8:16640248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:16640249`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C24
`Chr8:16640249`	`AC`	`A`	1bp_deletion	CDS_variant	1	C24
`Chr8:16640251`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783828.1

636 aa

318

636

ABC_tran

ABC2_membrane_7

ABC2_membrane

PF00005 ABC_tran 57-207 aa PF19055 ABC2_membrane_7 237-336 aa PF01061 ABC2_membrane 351-563 aa

XP_057783829.1

584 aa

292

584

ABC_tran

ABC2_membrane_7

ABC2_membrane

PF00005 ABC_tran 44-155 aa PF19055 ABC2_membrane_7 185-284 aa PF01061 ABC2_membrane 299-511 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783828.1`	Pfam	`PF00005`	ABC_tran	Domain	57	207	2.5e-28	100.1	ABC transporter
`XP_057783828.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	237	336	4.2e-12	46.4	ABC-2 type transporter
`XP_057783828.1`	Pfam	`PF01061`	ABC2_membrane	Domain	351	563	9.7e-39	133.8	ABC-2 type transporter
`XP_057783829.1`	Pfam	`PF00005`	ABC_tran	Domain	44	155	5.5e-15	56.9	ABC transporter
`XP_057783829.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	185	284	3.2e-12	46.8	ABC-2 type transporter
`XP_057783829.1`	Pfam	`PF01061`	ABC2_membrane	Domain	299	511	8e-39	134.1	ABC-2 type transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927845.1
ATTAATTCTCCCAAAAGTACATTGTTGACTTTTCTAAATACAGTTATTTGCTAAATATGTCTATATAAATTGTGCAACCAGTGTACTAGTGTTAGTTCACATATACCAAGAAATTAAACAAGAGAATGGTGAGTAGAATAGAGAGCAGCCCTGGGCCTCTTGAAACATCATCTCCCATTCCATTTTTAAATAAAAGAGGATCTCTATCATCTACTCCCAGCAATGGCATTCACTTAACTTGGCAAGACCTGTGGGTGACG...

XM_057927846.1
AGTTCACATATACCAAGAAATTAAACAAGAGAATGGTGAGTAGAATAGAGAGCAGCCCTGGGCCTCTTGAAACATCATCTCCCATTCCATTTTTAAATAAAAGAGGATCTCTATCATCTACTCCCAGCAATGGCATTCACTTAACTTGGCAAGACCTGTGGGTGACGGTGCCGGACAAGCCCGCATGGCGGCCCATCCTCCGCGGCCTCACCGGCTATGTCCAGCCGGCCGAGGTCCTCGCCATCATGGGCCCTTCCGGC...

CDS

2 records

下载 CDS FASTA

LOC131001454
ATGGTGAGTAGAATAGAGAGCAGCCCTGGGCCTCTTGAAACATCATCTCCCATTCCATTTTTAAATAAAAGAGGATCTCTATCATCTACTCCCAGCAATGGCATTCACTTAACTTGGCAAGACCTGTGGGTGACGGTGCCGGACAAGCCCGCATGGCGGCCCATCCTCCGCGGCCTCACCGGCTATGTCCAGCCGGCCGAGGTCCTCGCCATCATGGGCCCTTCCGGCTGCGGCAAGTCCACTCTCCTCGACGCATTAGC...

LOC131001454
ATGGCGGCCCATCCTCCGCGGCCTCACCGGCTATGTCCAGCCGGCCGAGGTCCTCGCCATCATGGGCCCTTCCGGCTGCGGCAAGTCCACTCTCCTCGACGCATTAGCAGGCTCGATTCTAACACCAGACAGAAGGGAGACATCCTCATCAACGGCCGAAAGCAGCAACTTGCATTTGGCATTTCATCGTACCTGCCCCAAGACGATGCGCTGGTGACGACGCTGACCGTGAGAGAAGCTGTATACTACTCGGCTCTCCT...

Protein

2 records

下载 Protein FASTA

XP_057783828.1
MVSRIESSPGPLETSSPIPFLNKRGSLSSTPSNGIHLTWQDLWVTVPDKPAWRPILRGLTGYVQPAEVLAIMGPSGCGKSTLLDALAGRLDSNTRQKGDILINGRKQQLAFGISSYLPQDDALVTTLTVREAVYYSALLQLPDSMSESEKKARAEGTIREMGLNDAMDTRIGGWNVKGLSGGQKRRVSICIELLRRPKLLFLDEPTSGLDSAASYHVMKHIVQLAQHQRITVVASIHQPSTEVFELFHNLCLLSCGQTVY...

XP_057783829.1
MAAHPPRPHRLCPAGRGPRHHGPFRLRQVHSPRRISRLDSNTRQKGDILINGRKQQLAFGISSYLPQDDALVTTLTVREAVYYSALLQLPDSMSESEKKARAEGTIREMGLNDAMDTRIGGWNVKGLSGGQKRRVSICIELLRRPKLLFLDEPTSGLDSAASYHVMKHIVQLAQHQRITVVASIHQPSTEVFELFHNLCLLSCGQTVYFGSTIAANQFFETNGFVCPPKRNPSDHYLRTINQDFDSDIEQGFAKEAITVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器