Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001932`

染色体: Chr08 坐标: 16903920-16906444 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001932`
名称	SmilChr08G001932
描述	transcription factor bHLH94-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16903920 - 16906444 / `-`

ID 对照

NCBI Gene ID	`LOC131001472`
GeneID	`131001472`
locus_tag	`-`
NCBI Name	`LOC131001472`
原始查询	`LOC131001472`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH94-like
产物	transcription factor bHLH94-like
Arabidopsis	`AT1G72210` (AT1G72210) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843553] identity=51.6; qcov=1.01; evalue=1.7e-73; confidence=high
Rice	`Os10g0376900` (OsbHLH045) - identity=54.6; qcov=0.799; evalue=9.2e-75; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF22754 (bHLH-TF_ACT-like_plant)
InterPro	-
eggNOG	-
NR	GeneID:131001472

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783844.1`
2	Chromosome	染色体	0.00000	`XP_057783844.1`
3	Centromere	着丝粒	0.00000	`XP_057783844.1`
4	Chromatin	染色质	0.00000	`XP_057783844.1`
5	Telomere	端粒	0.00000	`XP_057783844.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16904892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:16905801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B46
`Chr8:16905828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783844.1

273 aa

136

273

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 83-134 aa PF22754 bHLH-TF_ACT-like_plant 186-260 aa

XP_057783846.1

273 aa

136

273

HLH

bHLH-TF_ACT-like_plant

PF00010 HLH 83-134 aa PF22754 bHLH-TF_ACT-like_plant 186-260 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783844.1`	Pfam	`PF00010`	HLH	Domain	83	134	1.4e-12	47.9	Helix-loop-helix DNA-binding domain
`XP_057783844.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	186	260	1.5e-05	25.7	Plant bHLH transcription factor, ACT-like domain
`XP_057783846.1`	Pfam	`PF00010`	HLH	Domain	83	134	1.4e-12	47.9	Helix-loop-helix DNA-binding domain
`XP_057783846.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	186	260	1.5e-05	25.7	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927863.1
GAGTTGCTTACTTAACTAACATAATTTTTTCATCATCGTTATAAAAGTAACATACCAAGAGAATAAATAAATGCTCAATCATTATCATTGTTTAACTAAGTAGGCACGTAGAAGCAAGTAGCTAGGCCACGCGCTTACTGGTTTACACCGCAATCAATCAAGCATTAATATCTTATAATTCTCTCCCTTATAATAATGCATAAGAATCTCTCTCTCTCTCTCTCTCTCTCGAAATGCAAGTAAGGGAAGGAAGGACACAT...

XM_057927861.1
AGTAGGCACGTAGAAGCAAGTAGCTAGGCCACGCGCTTACTGGTTTACACCGCAATCAATCAAGCATTAATATCTTATAATTCTCTCCCTTATAATAATGCATAAGAATCTCTCTCTCTCTCTCTCTCTCTCGAAATGCAAGTAAGGGAAGGAAGGACACATACAAGACGAAGCGAAGCCTCACGTCTCACACGCGCAAAAGCCAAGATCGAGAGATATGGCAGCTCTCACTGTTCAACACGATCCATTTATTTACTCCT...

CDS

2 records

下载 CDS FASTA

LOC131001472
ATGGCAGCTCTCACTGTTCAACACGATCCATTTATTTACTCCTGCAAAGACTACACTTACAATATGGAAGAAGAGAAACCAAACCCTCGAAATGTTGAAATTTATGGAGAATATTGGGAGTCTCCGCCTTCTTCAGCCGCTCAGGCCGCCATCTCTTCCCCGGAGACTTGCGGCTCTCCCACGGGGAAGTGCCGCCGGAAGAGACGGCGCGTGAAGCCCACCAAGAATAAGGAGGAAATGGAGAACCAAAGGATGACTCA...

Protein

2 records

下载 Protein FASTA

XP_057783844.1
MAALTVQHDPFIYSCKDYTYNMEEEKPNPRNVEIYGEYWESPPSSAAQAAISSPETCGSPTGKCRRKRRRVKPTKNKEEMENQRMTHIAVERNRRRQMNDYLAVLRSIMPPSYTQRGDQASIVGGAINFVKELEQLQQFLEANNQQQPNEKLFSKFFTFPQYSTCPSTTTSAAVDAVAERRSSIADIEVMMVESHANIKLSTKRRPKQLLKLVAGFQSIGLTILHLNITTVDQSVLYSLSVKVEVECQFTTVNEIATTVH...

XP_057783846.1
MAALTVQHDPFIYSCKDYTYNMEEEKPNPRNVEIYGEYWESPPSSAAQAAISSPETCGSPTGKCRRKRRRVKPTKNKEEMENQRMTHIAVERNRRRQMNDYLAVLRSIMPPSYTQRGDQASIVGGAINFVKELEQLQQFLEANNQQQPNEKLFSKFFTFPQYSTCPSTTTSAAVDAVAERRSSIADIEVMMVESHANIKLSTKRRPKQLLKLVAGFQSIGLTILHLNITTVDQSVLYSLSVKVEVECQFTTVNEIATTVH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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