当前解析结果
SmilChr08G001953| 统一新 Gene ID | SmilChr08G001953 |
|---|---|
| 名称 | SmilChr08G001953 |
| 描述 | mitochondrial uncoupling protein 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 17193907 - 17195125 / - |
| NCBI Gene ID | LOC131001492 |
|---|---|
| GeneID | 131001492 |
| locus_tag | - |
| NCBI Name | LOC131001492 |
| 原始查询 | LOC131001492 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial uncoupling protein 5-like |
| 产物 | mitochondrial uncoupling protein 5-like |
| Arabidopsis | AT2G22500 (UCP5)uncoupling protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:816783] identity=75.6; qcov=1; evalue=1.09e-168; confidence=high |
| Rice | Os09g0465400- identity=64.7; qcov=1.03; evalue=5.74e-130; confidence=high |
| GO | GO:0008272 (GO:0008272); GO:0015116 (sulfate transmembrane transporter activity); GO:0015117 (thiosulfate transmembrane transporter activity); GO:0015131 (oxaloacetate transmembrane transporter activity); GO:0015140 (malate transmembrane transporter activity); GO:0015141 (succinate transmembrane transporter activity); GO:0015297 (antiporter activity); GO:0015709 (thiosulfate transport); GO:0015729 (oxaloacetate transport); GO:0035435 (phosphate ion transmembrane transport); GO:0071422 (succinate transmembrane transport); GO:0071423 (malate transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001492 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057783864.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057783864.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057783864.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783864.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783864.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:17194129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:17194202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr8:17194300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:17194321 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B63 |
Chr8:17194321 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B63 |
Chr8:17194325 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C46 |
Chr8:17194325 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C46 |
Chr8:17194420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B31,B95 |
Chr8:17194440 |
TA |
T |
1bp_deletion | frameshift_variant | 37 | A1,A19,B101,B102,B109,B126,B127,B133,B14,B15,B21,B23,B28,B50,B52,B53,B57,B6,B82,B87,B91,C16,C32,C4,C47,C61,C62,C63,C67,C70,C76,C79,C8,C81,C84,D6,D8 |
Chr8:17194456 |
CTT |
C |
2bp_deletion | frameshift_variant | 38 | A1,A19,B101,B102,B109,B126,B127,B133,B137,B14,B15,B21,B23,B28,B50,B52,B53,B57,B6,B69,B79,B82,B87,B91,C16,C32,C4,C47,C61,C62,C63,C67,C79,C8,C81,C84,D6,D8 |
Chr8:17194460 |
CT |
C |
1bp_deletion | frameshift_variant | 35 | A1,A19,B101,B102,B109,B126,B127,B133,B137,B14,B15,B21,B23,B28,B50,B52,B57,B6,B69,B79,B82,B87,B91,C16,C32,C4,C47,C61,C63,C67,C79,C8,C81,C84,D6 |
Chr8:17194574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783864.1PF00153
Mito_carr 5-115 aa
PF00153
Mito_carr 121-216 aa
PF00153
Mito_carr 224-313 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783864.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 5 | 115 | 1.3e-63 | 211.4 | Mitochondrial carrier protein |
XP_057783864.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 121 | 216 | 1.3e-63 | 211.4 | Mitochondrial carrier protein |
XP_057783864.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 224 | 313 | 1.3e-63 | 211.4 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。