Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001969`

染色体: Chr08 坐标: 17366752-17374295 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001969`
名称	SmilChr08G001969
描述	mechanosensitive ion channel protein 2, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17366752 - 17374295 / `-`

ID 对照

NCBI Gene ID	`LOC131001505`
GeneID	`131001505`
locus_tag	`-`
NCBI Name	`LOC131001505`
原始查询	`LOC131001505`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mechanosensitive ion channel protein 2, chloroplastic-like
产物	mechanosensitive ion channel protein 2%2C chloroplastic-like
Arabidopsis	`AT5G10490` (MSL2) MSCS-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:830913] identity=56.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0432900` - identity=35.3; qcov=0.345; evalue=5.5e-25; confidence=low
GO	GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00924 (MS_channel_2nd); PF24956 (Msl2-3_C); PF25237 (MSL2_3)
InterPro	-
eggNOG	-
NR	GeneID:131001505

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783876.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057783876.1`
3	Nucleus	细胞核	0.00000	`XP_057783876.1`
4	Chromosome	染色体	0.00000	`XP_057783876.1`
5	Centromere	着丝粒	0.00000	`XP_057783876.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17367172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr8:17367281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B37
`Chr8:17367305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:17367827`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D1
`Chr8:17367827`	`GC`	`G`	1bp_deletion	CDS_variant	1	D1
`Chr8:17373437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr8:17374095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783876.1

732 aa

366

732

MSL2_3

MS_channel_2nd

Msl2-3_C

PF25237 MSL2_3 153-282 aa PF00924 MS_channel_2nd 284-354 aa PF24956 Msl2-3_C 359-445 aa

XP_057783877.1

730 aa

365

730

MSL2_3

MS_channel_2nd

Msl2-3_C

PF25237 MSL2_3 151-280 aa PF00924 MS_channel_2nd 282-352 aa PF24956 Msl2-3_C 357-443 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783876.1`	Pfam	`PF25237`	MSL2_3	Domain	153	282	6.9e-69	231.2	Mechanosensitive channel protein 2/3 domain
`XP_057783876.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	284	354	8.3e-11	42.6	Mechanosensitive ion channel, beta-domain
`XP_057783876.1`	Pfam	`PF24956`	Msl2-3_C	Domain	359	445	9.8e-48	161.0	Mechanosensitive ion channel protein 2/3 C-terminal
`XP_057783877.1`	Pfam	`PF25237`	MSL2_3	Domain	151	280	6.9e-69	231.2	Mechanosensitive channel protein 2/3 domain
`XP_057783877.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	282	352	8.3e-11	42.6	Mechanosensitive ion channel, beta-domain
`XP_057783877.1`	Pfam	`PF24956`	Msl2-3_C	Domain	357	443	9.8e-48	161.0	Mechanosensitive ion channel protein 2/3 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927893.1
TTGGGCAGTTGGCGTGGAGCGCACCTGTTCCTTGTTCTCGTTATTTTCGTTTTTCGTATTTAATTATTACATTTATACACAGTATAAAATAAATAATACGAGTAGATCACATACAAATACATATGTATAGGTAGAGAGAGAGAGAGAGGGGGGAGAGAGGGGAAAGCGAGGAGAGAGAGAATGACTGTTTCTGGTTCTCTGCAGCTCTCCCTGCAGCTCGGAATCTGCCGGAACAATGGGCGTAGTAAAAGATTTCGGCT...

XM_057927894.1
ACATATGTATAGGTAGAGAGAGAGAGAGAGGGGGGAGAGAGGGGAAAGCGAGGAGAGAGAGAATGACTGTTTCTGGTTCTCTGCAGCTCTCCCTGCAGCTCGGAATCTGCCGGAACAATGGGCGTAGTAAAAGATTTCGGAATCCGAATGCAAAAGGCAGATTATGTATATCGAGCGATAACCTGCCCTCAATTTCACTGCAACACTATTCTTGGAGTTCAAATGTTTCGAAGAGAATAAATAGAAGAGTATGCACCATT...

CDS

2 records

下载 CDS FASTA

LOC131001505
ATGACTGTTTCTGGTTCTCTGCAGCTCTCCCTGCAGCTCGGAATCTGCCGGAACAATGGGCGTAGTAAAAGATTTCGGAATCCGAATGCAAAAGGCAGATTATGTATATCGAGCGATAACCTGCCCTCAATTTCACTGCAACACTATTCTTGGAGTTCAAATGTTTCGAAGAGAATAAATAGAAGAGTATGCACCATTCCTTGTAGAAATAACCGGCTTAGGTGCCATTGTTTTTTAAATCCAGGCGCCCCTTTGGACAC...

LOC131001505
ATGACTGTTTCTGGTTCTCTGCAGCTCTCCCTGCAGCTCGGAATCTGCCGGAACAATGGGCGTAGTAAAAGATTTCGGCTGCAGAATCCGAATGCAAAAGGCAGATTATGTATATCGAGCGATAACCTGCCCTCAATTTCACTGCAACACTATTCTTGGAGTTCAAATGTTTCGAAGAGAATAAATAGAAGAGTATGCACCATTCCTTGTAGAAATAACCGGCTTAGGTGCCATTGTTTTTTAAATCCAGGCGCCCCTTT...

Protein

2 records

下载 Protein FASTA

XP_057783876.1
MTVSGSLQLSLQLGICRNNGRSKRFRLQNPNAKGRLCISSDNLPSISLQHYSWSSNVSKRINRRVCTIPCRNNRLRCHCFLNPGAPLDTNCLKNATLTLARSFNRLQGSPLVIKLASAVSIIIFAVWGLGPLVRLSRNILFHKGDNTWKKSSTYQIITSYIQPLLLWAGAIIICRTLDPVTIPTEAGQVVKQRLLNFVRSLSTVLGFAYCLSSLILQAQKFAMETNDPTDTRNMGFQFAGKAIYTAVWVAAVSLFMELLG...

XP_057783877.1
MTVSGSLQLSLQLGICRNNGRSKRFRNPNAKGRLCISSDNLPSISLQHYSWSSNVSKRINRRVCTIPCRNNRLRCHCFLNPGAPLDTNCLKNATLTLARSFNRLQGSPLVIKLASAVSIIIFAVWGLGPLVRLSRNILFHKGDNTWKKSSTYQIITSYIQPLLLWAGAIIICRTLDPVTIPTEAGQVVKQRLLNFVRSLSTVLGFAYCLSSLILQAQKFAMETNDPTDTRNMGFQFAGKAIYTAVWVAAVSLFMELLGFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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