Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001984`

染色体: Chr08 坐标: 17543352-17547677 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001984`
名称	SmilChr08G001984
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17543352 - 17547677 / `-`

ID 对照

NCBI Gene ID	`LOC131001517`
GeneID	`131001517`
locus_tag	`-`
NCBI Name	`LOC131001517`
原始查询	`LOC131001517`

查看完整 ID 对照表

已核对的文献基因名映射

这些条目来自人工核对的文献基因名与当前参考基因组的映射。置信度反映映射证据强度，不代表该功能已在本材料中完成实验验证。

文献基因名	映射置信度	映射证据	文献功能摘要
`SmDXS2`	medium	Website function annotation keyword: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic	MEP-pathway gene associated with tanshinone biosynthesis regulation.

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
产物	probable 1-deoxy-D-xylulose-5-phosphate synthase 2%2C chloroplastic
Arabidopsis	`AT4G15560` (CLA1) Deoxyxylulose-5-phosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:827230] identity=72; qcov=0.951; evalue=0; confidence=high
Rice	`Os07g0190000` (OsDXS) - identity=83.1; qcov=0.94; evalue=0; confidence=high
GO	GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0016114 (terpenoid biosynthetic process)
KEGG	smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00676 (E1_dh); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N)
InterPro	-
eggNOG	-
NR	GeneID:131001517

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783899.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057783899.1`
3	Mitochondrion	线粒体	0.40000	`XP_057783899.1`
4	Nucleus	细胞核	0.00000	`XP_057783899.1`
5	Chromosome	染色体	0.00000	`XP_057783899.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17543905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:17544135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr8:17544137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B37
`Chr8:17544209`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B120
`Chr8:17544209`	`GT`	`G`	1bp_deletion	CDS_variant	1	B120
`Chr8:17544260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C59,C71
`Chr8:17544269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B37
`Chr8:17544455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B2,B80,C20,C37
`Chr8:17544461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B51,B78,C21
`Chr8:17544509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C9,D2
`Chr8:17544566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B36
`Chr8:17544603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783899.1

713 aa

356

713

DXP_synthase_N

E1_dh

Transket_pyr

Transketolase_C

PF13292 DXP_synthase_N 71-356 aa PF00676 E1_dh 181-242 aa PF02779 Transket_pyr 393-554 aa PF02780 Transketolase_C 572-695 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783899.1`	Pfam	`PF13292`	DXP_synthase_N	Family	71	356	1.9e-110	369.2	1-deoxy-D-xylulose-5-phosphate synthase
`XP_057783899.1`	Pfam	`PF00676`	E1_dh	Domain	181	242	1.2e-05	25.2	Dehydrogenase E1 component
`XP_057783899.1`	Pfam	`PF02779`	Transket_pyr	Domain	393	554	1.7e-47	162.0	Transketolase, pyrimidine binding domain
`XP_057783899.1`	Pfam	`PF02780`	Transketolase_C	Domain	572	695	5.1e-31	107.9	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927916.1
TAATTATAAATGTTGTCGTAGTTACCAACTTATTGCATAAATACCCACTCATCTTCTCCGCCAATCGACAATGGCCGTTTCCGGAATATTCATGTGCTTAAACCAGCCCACACTACCAAAATCCGGAGCCCCTAAGCTCAATCATGCCGGAAGAAAACACACGTTGTGCGTTAAAGCATGCCGCGGAAGTTCGGAATCAGAGGACGGCAAGATGGCGATTAGGAAAGAGAAAGACGGTTGGAGTATAGATTTCTCCGGCG...

CDS

1 records

下载 CDS FASTA

LOC131001517
ATGGCCGTTTCCGGAATATTCATGTGCTTAAACCAGCCCACACTACCAAAATCCGGAGCCCCTAAGCTCAATCATGCCGGAAGAAAACACACGTTGTGCGTTAAAGCATGCCGCGGAAGTTCGGAATCAGAGGACGGCAAGATGGCGATTAGGAAAGAGAAAGACGGTTGGAGTATAGATTTCTCCGGCGAGAAACCGGCGACGCCGATGCTGGACACGATCAACCACCCAATTCATATGAAGAACCTCTCAAAAAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057783899.1
MAVSGIFMCLNQPTLPKSGAPKLNHAGRKHTLCVKACRGSSESEDGKMAIRKEKDGWSIDFSGEKPATPMLDTINHPIHMKNLSKKELEQLAAELRVEIVHTVAKTGGHLSSSLGVVELTVALHHVFNTPHDKLIWDVGHQAYGHKILTGRRSKMHTIRQTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVARDLLGKDNSVVSVIGDGAMTAGQAYEAMNNAGFLDSNLIIVLNDNKQVSLPTATLDGPATPVGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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