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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001990

染色体: Chr08 坐标: 17610283-17620396 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001990
名称SmilChr08G001990
描述methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向17610283 - 17620396 / -

ID 对照

NCBI Gene IDLOC131001524
GeneID131001524
locus_tag-
NCBI NameLOC131001524
原始查询LOC131001524

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like
产物methylmalonate-semialdehyde dehydrogenase [acylating]%2C mitochondrial-like
ArabidopsisAT2G14170 (ALDH6B2)
aldehyde dehydrogenase 6B2 [Source:NCBI gene (formerly Entrezgene);Acc:815903]
identity=62.3; qcov=0.522; evalue=0; confidence=medium
RiceOs07g0188800 (OsALDH6B2)
-
identity=60.8; qcov=0.532; evalue=0; confidence=medium
GOGO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity); GO:0005739 (mitochondrion); GO:0006210 (thymine catabolic process); GO:0006574 (L-valine catabolic process); GO:0018478 (malonate-semialdehyde dehydrogenase (acetylating) activity); GO:0036086 (GO:0036086)
KEGGsmil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF00171 (Aldedh); PF08731 (AFT)
InterPro-
eggNOG-
NRGeneID:131001524

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057783905.1
2 Cytoplasm 细胞质 0.60000 XP_057783905.1
3 Cytosol 细胞质基质 0.60000 XP_057783905.1
4 Chromosome 染色体 0.00000 XP_057783905.1
5 Centromere 着丝粒 0.00000 XP_057783905.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:17610607 G A EMS_canonical_SNV CDS_variant 1 B46
Chr8:17610669 G A EMS_canonical_SNV CDS_variant 4 A6,B139,B73,C27
Chr8:17610684 G A EMS_canonical_SNV CDS_variant 4 A4,B51,B88,C35
Chr8:17610731 G A EMS_canonical_SNV CDS_variant 1 B46
Chr8:17610735 G A EMS_canonical_SNV CDS_variant 2 B122,B99
Chr8:17610745 C T EMS_canonical_SNV CDS_variant 3 A16,B29,B33
Chr8:17610787 A AG 1bp_insertion frameshift_variant 4 A11,B80,C14,D4
Chr8:17610787 A AG 1bp_insertion CDS_variant 4 A11,B80,C14,D4
Chr8:17610829 G A EMS_canonical_SNV CDS_variant 2 A18,C23
Chr8:17610845 TC T 1bp_deletion frameshift_variant 1 B102
Chr8:17610845 TC T 1bp_deletion CDS_variant 1 B102
Chr8:17611081 G A EMS_canonical_SNV CDS_variant 2 C63,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783905.1
930 aa
N
1
465
930
AFT
Aldedh
C
PF08731 AFT 23-112 aa PF00171 Aldedh 216-678 aa
XP_057783906.1
930 aa
N
1
465
930
AFT
Aldedh
C
PF08731 AFT 23-112 aa PF00171 Aldedh 216-678 aa
XP_057783907.1
930 aa
N
1
465
930
AFT
Aldedh
C
PF08731 AFT 23-112 aa PF00171 Aldedh 216-678 aa
XP_057783908.1
930 aa
N
1
465
930
AFT
Aldedh
C
PF08731 AFT 23-112 aa PF00171 Aldedh 216-678 aa
XP_057783909.1
925 aa
N
1
462
925
AFT
Aldedh
C
PF08731 AFT 23-112 aa PF00171 Aldedh 211-673 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783905.1 Pfam PF08731 AFT Family 23 112 5.5e-05 24.1 Transcription factor AFT
XP_057783905.1 Pfam PF00171 Aldedh Family 216 678 5e-112 375.5 Aldehyde dehydrogenase family
XP_057783906.1 Pfam PF08731 AFT Family 23 112 5.5e-05 24.1 Transcription factor AFT
XP_057783906.1 Pfam PF00171 Aldedh Family 216 678 5e-112 375.5 Aldehyde dehydrogenase family
XP_057783907.1 Pfam PF08731 AFT Family 23 112 5.5e-05 24.1 Transcription factor AFT
XP_057783907.1 Pfam PF00171 Aldedh Family 216 678 5e-112 375.5 Aldehyde dehydrogenase family
XP_057783908.1 Pfam PF08731 AFT Family 23 112 5.5e-05 24.1 Transcription factor AFT
XP_057783908.1 Pfam PF00171 Aldedh Family 216 678 5e-112 375.5 Aldehyde dehydrogenase family
XP_057783909.1 Pfam PF08731 AFT Family 23 112 5.5e-05 24.1 Transcription factor AFT
XP_057783909.1 Pfam PF00171 Aldedh Family 211 673 4.9e-112 375.5 Aldehyde dehydrogenase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057927923.1
TCTGTTTTAAGCGCTTTAACGGAACGTGGACTAACAGCAGTGAGATCAACAAGACGCTCCCTCAAATTCTTCGAAAATCAATAATGCCACACCTCAATTCTCTATTTCCAGAATATCCTTATTTTCAATCCTTCAAAAATTTCCCTCACTTTCTTCTCCTTCTGCAACAGTCACCAGTAAGCGTTCATTCGCGCAGAATTTGAACGCAGAATCACTGAATTTTTCTTGAATGAAGGTTCATAACCCCGATAGTCCACGAA...
XM_057927926.1
TCTGTTTTAAGCGCTTTAACGGAACGTGGACTAACAGCAGTGAGATCAACAAGACGCTCCCTCAAATTCTTCGAAAATCAATAATGCCACACCTCAATTCTCTATTTCCAGAATATCCTTATTTTCAATCCTTCAAAAATTTCCCTCACTTTCTTCTCCTTCTGCAACAGTCACCAGTAAGCGTTCATTCGCGCAGAATTTGAACGCAGAATCACTGAATTTTTCTTGAATGAAGGTTCATAACCCCGATAGTCCACGAA...

CDS

5 records

下载 CDS FASTA
LOC131001524
ATGGAAATCCCTTCCTCGTCTGAATTCACTTGGCAAAACATGATGCTTCCACCCCCGTCCCGAACGTTTCAGGATCGCGAAGACCTTATCAGTTATGTTCGTGATTTTGGTGTTAGCCAAGGATACATTGTAACGATACGGAAATCTAAGAAGGATAGAAGTGTTGTACTTGGTTGTGATAGAGGAGGTACTTATCGAAATAGGCGTAATGGTGAGGAGATGAAGCGCAAAAGGGAGGCTAGTTCTCGCCTCATAAACTG...
LOC131001524
ATGGAAATCCCTTCCTCGTCTGAATTCACTTGGCAAAACATGATGCTTCCACCCCCGTCCCGAACGTTTCAGGATCGCGAAGACCTTATCAGTTATGTTCGTGATTTTGGTGTTAGCCAAGGATACATTGTAACGATACGGAAATCTAAGAAGGATAGAAGTGTTGTACTTGGTTGTGATAGAGGAGGTACTTATCGAAATAGGCGTAATGGTGAGGAGATGAAGCGCAAAAGGGAGGCTAGTTCTCGCCTCATAAACTG...

Protein

5 records

下载 Protein FASTA
XP_057783905.1
MEIPSSSEFTWQNMMLPPPSRTFQDREDLISYVRDFGVSQGYIVTIRKSKKDRSVVLGCDRGGTYRNRRNGEEMKRKREASSRLINCPFQAIGKKDDDVWVLTVRNGEHNHEPLKDISEHRYSRRLTEEEVEQIKLMNEAGAKPRQMLEALKQSNPEFHSTPRHLYNVKAKIRQGLSEKSFKYWRPNLSAAVGAPTVRSVCAVPVKVTNYIGGKFLESQACEVIDVINPATQEVGSQVPMTTFEEFKAAVDAAKQAFPPW...
XP_057783906.1
MEIPSSSEFTWQNMMLPPPSRTFQDREDLISYVRDFGVSQGYIVTIRKSKKDRSVVLGCDRGGTYRNRRNGEEMKRKREASSRLINCPFQAIGKKDDDVWVLTVRNGEHNHEPLKDISEHRYSRRLTEEEVEQIKLMNEAGAKPRQMLEALKQSNPEFHSTPRHLYNVKAKIRQGLSEKSFKYWRPNLSAAVGAPTVRSVCAVPVKVTNYIGGKFLESQACEVIDVINPATQEVGSQVPMTTFEEFKAAVDAAKQAFPPW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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