Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002187`

染色体: Chr08 坐标: 19749014-19758430 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002187`
名称	SmilChr08G002187
描述	uncharacterized SmilChr08G002187
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19749014 - 19758430 / `-`

ID 对照

NCBI Gene ID	`LOC131001529`
GeneID	`131001529`
locus_tag	`-`
NCBI Name	`LOC131001529`
原始查询	`LOC131001529`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	HEAT repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831480]; symbol=AT5G16210; hit=AT5G16210; species=arabidopsis; confidence=high
产物	HEAT repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831480]; symbol=AT5G16210; hit=AT5G16210; species=arabidopsis; confidence=high
Arabidopsis	`AT5G16210` (AT5G16210) HEAT repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831480] identity=61.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0514300` - identity=59.2; qcov=1.03; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005802 (trans-Golgi network); GO:0032367 (intracellular cholesterol transport); GO:0055037 (recycling endosome)
KEGG	-
Pfam	PF30357 (RELCH_N); PF30359 (RELCH_C); PF31023 (RELCH_LH)
InterPro	-
eggNOG	-
NR	GeneID:131001529

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057783915.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057783916.1`
3	Trans-golgi network	Trans-golgi network	0.80000	`XP_057783914.1`
4	Cytoplasm	细胞质	0.40000	`XP_057783914.1`
5	Phragmoplast	Phragmoplast	0.40000	`XP_057783914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19749234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B55,C23
`Chr8:19749303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:19749355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C26
`Chr8:19750726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr8:19751153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19751201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,C80
`Chr8:19751562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C32,C68
`Chr8:19752731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B6,C39
`Chr8:19753213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B38,B39,B76,D11
`Chr8:19753620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B22,B77,C19,D6
`Chr8:19753844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:19754312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783914.1

1179 aa

590

1179

RELCH_LH

RELCH_N

RELCH_C

PF31023 RELCH_LH 150-193 aa PF30357 RELCH_N 455-719 aa PF30359 RELCH_C 838-1091 aa

XP_057783915.1

1125 aa

562

1125

RELCH_LH

RELCH_N

RELCH_C

PF31023 RELCH_LH 96-139 aa PF30357 RELCH_N 401-665 aa PF30359 RELCH_C 784-1037 aa

XP_057783916.1

1008 aa

504

1008

RELCH_N

RELCH_C

PF30357 RELCH_N 284-548 aa PF30359 RELCH_C 667-920 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783914.1`	Pfam	`PF31023`	RELCH_LH	Domain	150	193	1.8e-18	66.8	RELCH LisH-containing region
`XP_057783914.1`	Pfam	`PF30357`	RELCH_N	Repeat	455	719	1.6e-135	451.8	RAB11-binding protein RELCH N-terminal domain
`XP_057783914.1`	Pfam	`PF30359`	RELCH_C	Repeat	838	1091	3.4e-90	302.5	RAB11-binding protein RELCH C-terminal domain
`XP_057783915.1`	Pfam	`PF31023`	RELCH_LH	Domain	96	139	1.3e-17	64.0	RELCH LisH-containing region
`XP_057783915.1`	Pfam	`PF30357`	RELCH_N	Repeat	401	665	1.4e-135	452.0	RAB11-binding protein RELCH N-terminal domain
`XP_057783915.1`	Pfam	`PF30359`	RELCH_C	Repeat	784	1037	3.1e-90	302.6	RAB11-binding protein RELCH C-terminal domain
`XP_057783916.1`	Pfam	`PF30357`	RELCH_N	Repeat	284	548	1e-135	452.5	RAB11-binding protein RELCH N-terminal domain
`XP_057783916.1`	Pfam	`PF30359`	RELCH_C	Repeat	667	920	2.6e-90	302.9	RAB11-binding protein RELCH C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927931.1
AGTGAATTTTCTGAAACCAAATTCCCACGCTTCATAGATCTCACCAAAGACCTCCGCACCGGAAAATGTGGCGTTGATTCGCCACGGCACAGAGTTCCGAATTGGTCCAGATGGACGTAGAGAGATCTTCGCTCTGCAATTGTGTAGTGAATTTCTTGCTTGAAGAGAATTACTTGCTGTCGGCGTTCGAGCTTCTTCACGAGCTCCTCGAAGATGGCCGCGACAATCACGCTATTCGCCTCAAGGAATTCTTCTCCGAT...

XM_057927932.1
TCATGAAGTTGTCTGGGGTGATCTCTGCAGCATGCTCATGGTTCTTATCCATGTTTCTATGGAAGCAATTTCCCATCAATAAAATAGAAACTTAAGAGATGAGCCAAAAGACAGTGCTGTAAATATACCCTTATTGTTCATTCTAAAGAGAACCAAACCAAGTGTGAACTTTCTGAATACTCATTTCCTTCAGGTTTCTGTTACTTGTGGATGAATAATGTAAAATGAATTAATTTCAAAATTTCAAGTTTACTAATTAC...

CDS

3 records

下载 CDS FASTA

LOC131001529
ATGGACGTAGAGAGATCTTCGCTCTGCAATTGTGTAGTGAATTTCTTGCTTGAAGAGAATTACTTGCTGTCGGCGTTCGAGCTTCTTCACGAGCTCCTCGAAGATGGCCGCGACAATCACGCTATTCGCCTCAAGGAATTCTTCTCCGATCCGACTCAATTTCCTCCCGATCAGATCTCCCGCTTCAACTCTCTACGAGTGGCAGATCCCCAGAGTCTATTTGAAGAAAAGGAATCGCTGGAAGAAAAATTGGCTGTCCG...

LOC131001529
ATGAGCTGCTTCCAAATGATTCGACTATATCAATTAGTGGCAGATCCCCAGAGTCTATTTGAAGAAAAGGAATCGCTGGAAGAAAAATTGGCTGTCCGTGAATATGAACTTCGTTTAGCTCAAGAAGACATTGTTAACCTTAAGACTGAGTTGCTCAAGAAAGCTGAGACAACCGTGGATGAATCAAGAGATCCAAATGTTAATACCACAGCAAATAATGGACTGGTTTCCAAACCGATATACAGGGACATCTCTTCGTC...

Protein

3 records

下载 Protein FASTA

XP_057783914.1
MDVERSSLCNCVVNFLLEENYLLSAFELLHELLEDGRDNHAIRLKEFFSDPTQFPPDQISRFNSLRVADPQSLFEEKESLEEKLAVREYELRLAQEDIVNLKTELLKKAETTVDESRDPNVNTTANNGLVSKPIYRDISSSDLGPLKDNERLDINCAVKEYLLLAGYRLTAMTFYEEVTDQNLDVWQNSSACVPDALRHYYYQYLSSAGDAAVEKIVMLRENESLLKENERLQSDIQSLSKAKEMSDAQVMSLTKSLEVL...

XP_057783915.1
MSCFQMIRLYQLVADPQSLFEEKESLEEKLAVREYELRLAQEDIVNLKTELLKKAETTVDESRDPNVNTTANNGLVSKPIYRDISSSDLGPLKDNERLDINCAVKEYLLLAGYRLTAMTFYEEVTDQNLDVWQNSSACVPDALRHYYYQYLSSAGDAAVEKIVMLRENESLLKENERLQSDIQSLSKAKEMSDAQVMSLTKSLEVLQKDIKEKANTVRGLKKTLKSQRKELDDCRAEITSLKMLIEGARSGNMLLEADSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器