当前解析结果
SmilChr08G002182| 统一新 Gene ID | SmilChr08G002182 |
|---|---|
| 名称 | SmilChr08G002182 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 19711862 - 19714642 / - |
| NCBI Gene ID | LOC131001537 |
|---|---|
| GeneID | 131001537 |
| locus_tag | - |
| NCBI Name | LOC131001537 |
| 原始查询 | LOC131001537 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| Arabidopsis | AT1G70250 (AT1G70250)receptor serine/threonine kinase [Source:NCBI gene (formerly Entrezgene);Acc:843361] identity=53.3; qcov=0.451; evalue=1.32e-118; confidence=medium |
| Rice | Os03g0828800- identity=35.9; qcov=0.964; evalue=1.88e-137; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001537 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783927.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783927.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783927.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783927.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783927.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:19711878 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B13,B66,B8 |
Chr8:19711878 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B13,B66,B8 |
Chr8:19711881 |
T |
TTG |
2bp_insertion | frameshift_variant | 3 | B13,B66,B8 |
Chr8:19711881 |
T |
TTG |
2bp_insertion | CDS_variant | 3 | B13,B66,B8 |
Chr8:19711915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C21,C69 |
Chr8:19711925 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B77,C19,D6 |
Chr8:19711925 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B77,C19,D6 |
Chr8:19712007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,C85 |
Chr8:19712146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C50 |
Chr8:19712155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B105,B22,C16,C42 |
Chr8:19712156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B100,B106,C81 |
Chr8:19712189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B42,B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783927.1PF01453
B_lectin 75-160 aa
PF00954
S_locus_glycop 252-314 aa
PF07714
PK_Tyr_Ser-Thr 496-755 aa
PF00069
Pkinase 497-754 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783927.1 |
Pfam | PF01453 |
B_lectin | Repeat | 75 | 160 | 6.8e-18 | 65.8 | D-mannose binding lectin |
XP_057783927.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 252 | 314 | 2e-06 | 29.0 | S-locus glycoprotein domain |
XP_057783927.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 496 | 755 | 1.6e-45 | 156.2 | Protein tyrosine and serine/threonine kinase |
XP_057783927.1 |
Pfam | PF00069 |
Pkinase | Domain | 497 | 754 | 4e-46 | 158.3 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。