当前解析结果
SmilChr01G004351| 统一新 Gene ID | SmilChr01G004351 |
|---|---|
| 名称 | SmilChr01G004351 |
| 描述 | pentatricopeptide repeat-containing protein At2g41720 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61712137 - 61716762 / + |
| NCBI Gene ID | LOC131001544 |
|---|---|
| GeneID | 131001544 |
| locus_tag | - |
| NCBI Name | LOC131001544 |
| 原始查询 | LOC131001544 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g41720 |
| 产物 | pentatricopeptide repeat-containing protein At2g41720 |
| Arabidopsis | AT2G41720 (EMB2654)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818771] identity=64.3; qcov=0.947; evalue=0; confidence=high |
| Rice | Os07g0213300- identity=60.2; qcov=0.802; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001544 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057783984.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057783984.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783984.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783984.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783984.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61712317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B13,B38,B39,B70,C79 |
Chr1:61712461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:61712894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr1:61713805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B104 |
Chr1:61713809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C41 |
Chr1:61714006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:61714299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D11,D7 |
Chr1:61714362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B83 |
Chr1:61714507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:61716197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783984.1PF23276
TPR_24 105-206 aa
PF01535
PPR 154-183 aa
PF13041
PPR_2 154-197 aa
PF13812
PPR_3 155-198 aa
PF12854
PPR_1 182-213 aa
PF13041
PPR_2 186-232 aa
PF01535
PPR 189-215 aa
PF23276
TPR_24 204-317 aa
PF17177
PPR_long 206-307 aa
PF13812
PPR_3 209-267 aa
PF13041
PPR_2 220-267 aa
PF01535
PPR 223-253 aa
PF01535
PPR 258-285 aa
PF13041
PPR_2 258-304 aa
PF17177
PPR_long 274-408 aa
PF13812
PPR_3 281-339 aa
PF01535
PPR 294-321 aa
PF13812
PPR_3 326-374 aa
PF13041
PPR_2 327-375 aa
PF01535
PPR 330-360 aa
PF12854
PPR_1 359-391 aa
PF13041
PPR_2 362-410 aa
PF01535
PPR 365-395 aa
PF17177
PPR_long 382-493 aa
PF13812
PPR_3 385-447 aa
PF12854
PPR_1 393-426 aa
PF13041
PPR_2 397-444 aa
PF01535
PPR 400-430 aa
PF23276
TPR_24 405-528 aa
PF12854
PPR_1 429-461 aa
PF13041
PPR_2 432-480 aa
PF01535
PPR 435-465 aa
PF23276
TPR_24 475-597 aa
PF13812
PPR_3 491-551 aa
PF13041
PPR_2 503-551 aa
PF01535
PPR 506-534 aa
PF17177
PPR_long 519-654 aa
PF12854
PPR_1 534-566 aa
PF13041
PPR_2 539-579 aa
PF01535
PPR 540-570 aa
PF13812
PPR_3 563-619 aa
PF01535
PPR 576-605 aa
PF13041
PPR_2 577-619 aa
PF13812
PPR_3 597-654 aa
PF13041
PPR_2 607-654 aa
PF01535
PPR 611-639 aa
PF01535
PPR 716-741 aa
XP_057783992.1PF23276
TPR_24 105-206 aa
PF01535
PPR 154-183 aa
PF13041
PPR_2 154-197 aa
PF13812
PPR_3 155-198 aa
PF12854
PPR_1 182-213 aa
PF13041
PPR_2 186-232 aa
PF01535
PPR 189-215 aa
PF23276
TPR_24 204-317 aa
PF17177
PPR_long 206-319 aa
PF13812
PPR_3 209-267 aa
PF13041
PPR_2 220-267 aa
PF01535
PPR 223-253 aa
PF01535
PPR 258-285 aa
PF13041
PPR_2 258-304 aa
PF17177
PPR_long 274-408 aa
PF13812
PPR_3 281-339 aa
PF01535
PPR 294-321 aa
PF13812
PPR_3 326-374 aa
PF13041
PPR_2 327-375 aa
PF01535
PPR 330-360 aa
PF12854
PPR_1 359-391 aa
PF13041
PPR_2 362-410 aa
PF01535
PPR 365-395 aa
PF17177
PPR_long 382-493 aa
PF13812
PPR_3 385-447 aa
PF12854
PPR_1 393-426 aa
PF13041
PPR_2 397-444 aa
PF01535
PPR 400-430 aa
PF23276
TPR_24 405-528 aa
PF12854
PPR_1 429-461 aa
PF13041
PPR_2 432-480 aa
PF01535
PPR 435-465 aa
PF23276
TPR_24 475-598 aa
PF13812
PPR_3 491-551 aa
PF13041
PPR_2 503-551 aa
PF01535
PPR 506-534 aa
PF17177
PPR_long 519-654 aa
PF12854
PPR_1 534-566 aa
PF13041
PPR_2 539-579 aa
PF01535
PPR 540-570 aa
PF13812
PPR_3 563-619 aa
PF01535
PPR 576-605 aa
PF13041
PPR_2 577-619 aa
PF13812
PPR_3 597-654 aa
PF13041
PPR_2 607-654 aa
PF01535
PPR 611-639 aa
PF01535
PPR 716-741 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783984.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 105 | 206 | 7.7e-52 | 175.4 | Pentatricopeptide repeat-containing protein |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 154 | 183 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 154 | 197 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 155 | 198 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 182 | 213 | 4.1e-91 | 299.1 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 186 | 232 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 215 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 204 | 317 | 7.7e-52 | 175.4 | Pentatricopeptide repeat-containing protein |
XP_057783984.1 |
Pfam | PF17177 |
PPR_long | Repeat | 206 | 307 | 5.5e-44 | 150.8 | Pentacotripeptide-repeat region of PRORP |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 209 | 267 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 220 | 267 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 223 | 253 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 258 | 285 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 258 | 304 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF17177 |
PPR_long | Repeat | 274 | 408 | 5.5e-44 | 150.8 | Pentacotripeptide-repeat region of PRORP |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 281 | 339 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 294 | 321 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 326 | 374 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 327 | 375 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 330 | 360 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 359 | 391 | 4.1e-91 | 299.1 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 362 | 410 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 365 | 395 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF17177 |
PPR_long | Repeat | 382 | 493 | 5.5e-44 | 150.8 | Pentacotripeptide-repeat region of PRORP |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 385 | 447 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 393 | 426 | 4.1e-91 | 299.1 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 397 | 444 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 400 | 430 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 405 | 528 | 7.7e-52 | 175.4 | Pentatricopeptide repeat-containing protein |
XP_057783984.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 429 | 461 | 4.1e-91 | 299.1 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 432 | 480 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 435 | 465 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 475 | 597 | 7.7e-52 | 175.4 | Pentatricopeptide repeat-containing protein |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 491 | 551 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 503 | 551 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 506 | 534 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF17177 |
PPR_long | Repeat | 519 | 654 | 5.5e-44 | 150.8 | Pentacotripeptide-repeat region of PRORP |
XP_057783984.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 534 | 566 | 4.1e-91 | 299.1 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 539 | 579 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 540 | 570 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 563 | 619 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 576 | 605 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 577 | 619 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 597 | 654 | 2e-90 | 297.5 | Pentatricopeptide repeat domain |
XP_057783984.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 607 | 654 | 6e-141 | 459.2 | PPR repeat family |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 611 | 639 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783984.1 |
Pfam | PF01535 |
PPR | Repeat | 716 | 741 | 2.9e-103 | 331.9 | PPR repeat |
XP_057783992.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 105 | 206 | 2.3e-52 | 177.1 | Pentatricopeptide repeat-containing protein |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 154 | 183 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 154 | 197 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 155 | 198 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 182 | 213 | 3.2e-91 | 299.4 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 186 | 232 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 189 | 215 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 204 | 317 | 2.3e-52 | 177.1 | Pentatricopeptide repeat-containing protein |
XP_057783992.1 |
Pfam | PF17177 |
PPR_long | Repeat | 206 | 319 | 4.9e-44 | 150.9 | Pentacotripeptide-repeat region of PRORP |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 209 | 267 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 220 | 267 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 223 | 253 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 258 | 285 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 258 | 304 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF17177 |
PPR_long | Repeat | 274 | 408 | 4.9e-44 | 150.9 | Pentacotripeptide-repeat region of PRORP |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 281 | 339 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 294 | 321 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 326 | 374 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 327 | 375 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 330 | 360 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 359 | 391 | 3.2e-91 | 299.4 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 362 | 410 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 365 | 395 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF17177 |
PPR_long | Repeat | 382 | 493 | 4.9e-44 | 150.9 | Pentacotripeptide-repeat region of PRORP |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 385 | 447 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 393 | 426 | 3.2e-91 | 299.4 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 397 | 444 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 400 | 430 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 405 | 528 | 2.3e-52 | 177.1 | Pentatricopeptide repeat-containing protein |
XP_057783992.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 429 | 461 | 3.2e-91 | 299.4 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 432 | 480 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 435 | 465 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 475 | 598 | 2.3e-52 | 177.1 | Pentatricopeptide repeat-containing protein |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 491 | 551 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 503 | 551 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 506 | 534 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF17177 |
PPR_long | Repeat | 519 | 654 | 4.9e-44 | 150.9 | Pentacotripeptide-repeat region of PRORP |
XP_057783992.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 534 | 566 | 3.2e-91 | 299.4 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 539 | 579 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 540 | 570 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 563 | 619 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 576 | 605 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 577 | 619 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 597 | 654 | 1.6e-90 | 297.8 | Pentatricopeptide repeat domain |
XP_057783992.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 607 | 654 | 3.8e-141 | 459.8 | PPR repeat family |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 611 | 639 | 2.2e-103 | 332.3 | PPR repeat |
XP_057783992.1 |
Pfam | PF01535 |
PPR | Repeat | 716 | 741 | 2.2e-103 | 332.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。