Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001996`

染色体: Chr08 坐标: 17700445-17704970 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001996`
名称	SmilChr08G001996
描述	probable rhamnogalacturonate lyase B
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17700445 - 17704970 / `-`

ID 对照

NCBI Gene ID	`LOC131001547`
GeneID	`131001547`
locus_tag	`-`
NCBI Name	`LOC131001547`
原始查询	`LOC131001547`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable rhamnogalacturonate lyase B
产物	probable rhamnogalacturonate lyase B
Arabidopsis	`AT2G22620` (AT2G22620) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816793] identity=59.7; qcov=0.995; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=58.9; qcov=1; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:131001547

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057783985.1`
2	Secreted	分泌到胞外	1.00000	`XP_057783987.1`
3	Cell wall	细胞壁	0.20000	`XP_057783985.1`
4	Nucleus	细胞核	0.00000	`XP_057783986.1`
5	Chromosome	染色体	0.00000	`XP_057783986.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17700564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B122
`Chr8:17700653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B122
`Chr8:17700754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,C30,C50,C75
`Chr8:17700911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,C30,C50,C75
`Chr8:17701302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B58,C72,D9
`Chr8:17701915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B17,B68,B84,C21
`Chr8:17702148`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C79
`Chr8:17702148`	`TC`	`T`	1bp_deletion	CDS_variant	1	C79
`Chr8:17702152`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C79
`Chr8:17702152`	`GT`	`G`	1bp_deletion	CDS_variant	1	C79
`Chr8:17702345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:17702359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,C21,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783985.1

677 aa

338

677

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 50-240 aa PF14686 fn3_3 394-466 aa PF14683 CBM-like 480-668 aa

XP_057783986.1

673 aa

336

673

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 46-236 aa PF14686 fn3_3 390-462 aa PF14683 CBM-like 476-664 aa

XP_057783987.1

604 aa

302

604

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 1-167 aa PF14686 fn3_3 321-393 aa PF14683 CBM-like 407-595 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783985.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	50	240	1.1e-81	274.0	Rhamnogalacturonate lyase family
`XP_057783985.1`	Pfam	`PF14686`	fn3_3	Domain	394	466	4.7e-21	75.0	Polysaccharide lyase family 4, domain II
`XP_057783985.1`	Pfam	`PF14683`	CBM-like	Domain	480	668	7e-47	160.0	Polysaccharide lyase family 4, domain III
`XP_057783986.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	46	236	1e-81	274.1	Rhamnogalacturonate lyase family
`XP_057783986.1`	Pfam	`PF14686`	fn3_3	Domain	390	462	4.7e-21	75.1	Polysaccharide lyase family 4, domain II
`XP_057783986.1`	Pfam	`PF14683`	CBM-like	Domain	476	664	7e-47	160.0	Polysaccharide lyase family 4, domain III
`XP_057783987.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	1	167	3.7e-71	239.6	Rhamnogalacturonate lyase family
`XP_057783987.1`	Pfam	`PF14686`	fn3_3	Domain	321	393	3.9e-21	75.3	Polysaccharide lyase family 4, domain II
`XP_057783987.1`	Pfam	`PF14683`	CBM-like	Domain	407	595	5.7e-47	160.3	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928002.1
TGCCTCACACATTCTCATATTCCCTCACACAAGTCTCCACCTTCTCCTCTGCAACAAAATTCTCCATAACTTAATTGGTATATATTTCCTTCCAAGAACTCTGAGAGAGAGAGAGAGAGAATGGCGAGGCAGAAAAAATGTGGTTGGAATTTGAGGTGGTTGGCCATTCTTCTTCAAACCTTCTTGCTTGCACAATGTGCTGCATCAAGATGGCAAAAGATTCACCAAAATGAGGAGGACGACGAAATATACTACCCTCC...

XM_057928003.1
GCCTCACACATTCTCATATTCCCTCACACAAGTCTCCACCTTCTCCTCTGCAACAAAATTCTCCATAACTTAATTGGTATATATTTCCTTCCAAGAACTCTGAGAGAGAGAGAGAGAGAATGGCGAGGCAGAAAAAATGTGGTTGGAATTTGAGGTGGTTGGCCATTCTTCTTCAAACCTTCTTGCTTGCACAATGTGCTGCATCAAGATGGCATGCAGAAAGATTCACCAAAATGAGGAGGACGACGAAATATACTACC...

CDS

3 records

下载 CDS FASTA

LOC131001547
ATGGCGAGGCAGAAAAAATGTGGTTGGAATTTGAGGTGGTTGGCCATTCTTCTTCAAACCTTCTTGCTTGCACAATGTGCTGCATCAAGATGGCAAAAGATTCACCAAAATGAGGAGGACGACGAAATATACTACCCTCCAGTTCAGTTGCATGATTTCGAAGACCACATAGTGTTGGACAATGGCATCCTCAATGTGACTCTGTCGACCCCCGAGGGCATGATCACTAAAATAACCTATAACGGTATCCACAATCTACT...

LOC131001547
ATGTGGTTGGAATTTGAGGTGGTTGGCCATTCTTCTTCAAACCTTCTTGCTTGCACAATGTGCTGCATCAAGATGGCATGCAGAAAGATTCACCAAAATGAGGAGGACGACGAAATATACTACCCTCCAGTTCAGTTGCATGATTTCGAAGACCACATAGTGTTGGACAATGGCATCCTCAATGTGACTCTGTCGACCCCCGAGGGCATGATCACTAAAATAACCTATAACGGTATCCACAATCTACTCGAACAAGAGTA...

Protein

3 records

下载 Protein FASTA

XP_057783985.1
MARQKKCGWNLRWLAILLQTFLLAQCAASRWQKIHQNEEDDEIYYPPVQLHDFEDHIVLDNGILNVTLSTPEGMITKITYNGIHNLLEQEYNENNRGYWDLVWSSPDHPTDIFDKLDGTNLFVIREDEDQVEVSFVRTWDSSQTGLLPLNIDKRFIMLRGCPGFYSYAIFERLQGWPDLHMSQGRIVFKLQQNLFEYMAISDDRQRVMPTSEDRNRSQVLDYPEAVLLTNPTNAFLRGEVDDKYQYSSDNKDSQVHGWIA...

XP_057783986.1
MWLEFEVVGHSSSNLLACTMCCIKMACRKIHQNEEDDEIYYPPVQLHDFEDHIVLDNGILNVTLSTPEGMITKITYNGIHNLLEQEYNENNRGYWDLVWSSPDHPTDIFDKLDGTNLFVIREDEDQVEVSFVRTWDSSQTGLLPLNIDKRFIMLRGCPGFYSYAIFERLQGWPDLHMSQGRIVFKLQQNLFEYMAISDDRQRVMPTSEDRNRSQVLDYPEAVLLTNPTNAFLRGEVDDKYQYSSDNKDSQVHGWIAADPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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