Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002142`

染色体: Chr08 坐标: 19285483-19288502 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002142`
名称	SmilChr08G002142
描述	plant intracellular Ras-group-related LRR protein 4-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19285483 - 19288502 / `+`

ID 对照

NCBI Gene ID	`LOC131001563`
GeneID	`131001563`
locus_tag	`-`
NCBI Name	`LOC131001563`
原始查询	`LOC131001563`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant intracellular Ras-group-related LRR protein 4-like
产物	plant intracellular Ras-group-related LRR protein 4-like
Arabidopsis	`AT4G35470` (PIRL4) plant intracellular ras group-related LRR 4 [Source:NCBI gene (formerly Entrezgene);Acc:829699] identity=61.1; qcov=0.993; evalue=0; confidence=high
Rice	`Os08g0511700` (pi55-1) - identity=52.2; qcov=1; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF12799 (LRR_4); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131001563

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057784011.1`
2	Nucleus	细胞核	0.00000	`XP_057784011.1`
3	Chromosome	染色体	0.00000	`XP_057784011.1`
4	Centromere	着丝粒	0.00000	`XP_057784011.1`
5	Chromatin	染色质	0.00000	`XP_057784011.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19286435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C41
`Chr8:19286442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr8:19286479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B88
`Chr8:19286597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr8:19286601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19286669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr8:19286707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr8:19286900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,C50
`Chr8:19287204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,C77
`Chr8:19287246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19287672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr8:19287854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784011.1

565 aa

282

565

LRR_8

LRR_1

LRR_4

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

PF13855 LRR_8 254-295 aa PF00560 LRR_1 262-282 aa PF12799 LRR_4 262-299 aa PF00560 LRR_1 307-327 aa PF23598 LRR_14 325-454 aa PF00560 LRR_1 330-351 aa PF13855 LRR_8 445-504 aa PF00560 LRR_1 471-489 aa

XP_057784013.1

565 aa

282

565

LRR_8

LRR_1

LRR_4

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784011.1`	Pfam	`PF13855`	LRR_8	Repeat	254	295	7.4e-33	112.8	Leucine rich repeat
`XP_057784011.1`	Pfam	`PF00560`	LRR_1	Repeat	262	282	2e-23	78.1	Leucine Rich Repeat
`XP_057784011.1`	Pfam	`PF12799`	LRR_4	Repeat	262	299	1e-28	99.4	Leucine Rich repeats (2 copies)
`XP_057784011.1`	Pfam	`PF00560`	LRR_1	Repeat	307	327	2e-23	78.1	Leucine Rich Repeat
`XP_057784011.1`	Pfam	`PF23598`	LRR_14	Repeat	325	454	1.7e-35	123.2	Leucine-rich repeat region
`XP_057784011.1`	Pfam	`PF00560`	LRR_1	Repeat	330	351	2e-23	78.1	Leucine Rich Repeat
`XP_057784011.1`	Pfam	`PF13855`	LRR_8	Repeat	445	504	7.4e-33	112.8	Leucine rich repeat
`XP_057784011.1`	Pfam	`PF00560`	LRR_1	Repeat	471	489	2e-23	78.1	Leucine Rich Repeat
`XP_057784013.1`	Pfam	`PF13855`	LRR_8	Repeat	254	295	7.4e-33	112.8	Leucine rich repeat
`XP_057784013.1`	Pfam	`PF00560`	LRR_1	Repeat	262	282	2e-23	78.1	Leucine Rich Repeat
`XP_057784013.1`	Pfam	`PF12799`	LRR_4	Repeat	262	299	1e-28	99.4	Leucine Rich repeats (2 copies)
`XP_057784013.1`	Pfam	`PF00560`	LRR_1	Repeat	307	327	2e-23	78.1	Leucine Rich Repeat
`XP_057784013.1`	Pfam	`PF23598`	LRR_14	Repeat	325	454	1.7e-35	123.2	Leucine-rich repeat region
`XP_057784013.1`	Pfam	`PF00560`	LRR_1	Repeat	330	351	2e-23	78.1	Leucine Rich Repeat
`XP_057784013.1`	Pfam	`PF13855`	LRR_8	Repeat	445	504	7.4e-33	112.8	Leucine rich repeat
`XP_057784013.1`	Pfam	`PF00560`	LRR_1	Repeat	471	489	2e-23	78.1	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928030.1
GAAATCGCAATAAATGGGACTATAAATTAAGACAAGCTAGCGCTGAGTGGATCTATTGATAAACCATATCTCCGTCTCTGTCTTTGCAACAAAACAAATAATTACTTCAATTATCCATCACTTCCCTTTTCCTCTTTTCCCCAATTCGATTTCCTTTTTCACCGGTACCAGCAATTGCTCAGCTGCTGCGCGATTTGATTGGTGCGAGCGGATCGTTTCACGGCCAGAAAATTTCTGATGCGACGTGTTGGTTAGTAAAA...

XM_057928028.1
TATAAATTAAGACAAGCTAGCGCTGAGTGGATCTATTGATAAACCATATCTCCGTCTCTGTCTTTGCAACAAAACAAATAATTACTTCAATTATCCATCACTTCCCTTTTCCTCTTTTCCCCAATTCGATTTCCTTTTTCACCGGTACCAGCAATTGCTCAGCTGCTGCGCGATTTGATTGGTGCGAGCGGATCGTTTCACGGCCAGAAAATTTCTGATGCGACGTGTTGGTTAGTAAAAGAATAAGTTTGTAGTACAAG...

CDS

2 records

下载 CDS FASTA

LOC131001563
ATGGAGTCATCATTGATGACGACCGACGATGTTGTCGAAGAAATAATGAGACTTCACCGGTCGTTGCCGGCGCGGCCAGGGATCGATGAAGTCGAAGCTGCAAAAACTCTGATCCGAAACGTGGAGAGGGAAGATCAGTTGGGTTTGGAGGCGATTGCGAAGCAAAACAAGGGGAAAGATGTGCCGGAGGAGCTGTTCAAGATTTTGCAGGAGATCCAGAGGAGCATGATCCATTTTCAGAGCAAGGAGCATAGCAGAGA...

Protein

2 records

下载 Protein FASTA

XP_057784011.1
MESSLMTTDDVVEEIMRLHRSLPARPGIDEVEAAKTLIRNVEREDQLGLEAIAKQNKGKDVPEELFKILQEIQRSMIHFQSKEHSREALKLLDLESVHLVFDDLIQRASRCLPGYSDSQYSDTVKASYSSSNSLSPTVNTSATTTSSSSSSFYNEKEIAKASEPLFTRDDMYVKKAKMGGFHMDGLGIGNRAGDFSAAPQIVDPTLKPVTASGQDGEKLSLIKLASLIEASAKKGTQKLVLRGKLSDQIKWLPDSIRKLS...

XP_057784013.1
MESSLMTTDDVVEEIMRLHRSLPARPGIDEVEAAKTLIRNVEREDQLGLEAIAKQNKGKDVPEELFKILQEIQRSMIHFQSKEHSREALKLLDLESVHLVFDDLIQRASRCLPGYSDSQYSDTVKASYSSSNSLSPTVNTSATTTSSSSSSFYNEKEIAKASEPLFTRDDMYVKKAKMGGFHMDGLGIGNRAGDFSAAPQIVDPTLKPVTASGQDGEKLSLIKLASLIEASAKKGTQKLVLRGKLSDQIKWLPDSIRKLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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