当前解析结果
SmilChr08G002155| 统一新 Gene ID | SmilChr08G002155 |
|---|---|
| 名称 | SmilChr08G002155 |
| 描述 | cytokinin hydroxylase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 19469650 - 19473577 / + |
| NCBI Gene ID | LOC131001575 |
|---|---|
| GeneID | 131001575 |
| locus_tag | - |
| NCBI Name | LOC131001575 |
| 原始查询 | LOC131001575 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytokinin hydroxylase-like |
| 产物 | cytokinin hydroxylase-like |
| Arabidopsis | AT5G38450 (CYP735A1)cytochrome P450, family 735, subfamily A, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:833833] identity=69; qcov=0.986; evalue=0; confidence=high |
| Rice | Os07g0418500 (OsCYP709C9)- identity=38.1; qcov=0.969; evalue=4.94e-126; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001575 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057784040.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057784040.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784040.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784040.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784040.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:19470151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr8:19470228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C2 |
Chr8:19470288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr8:19470583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C2 |
Chr8:19470858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr8:19471145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr8:19471437 |
C |
T |
EMS_canonical_SNV | stop_gained | 53 | A15,A19,A4,A5,A7,B101,B113,B115,B117,B131,B136,B20,B24,B26,B31,B37,B4,B40,B47,B5,B50,B51,B53,B57,B60,B64,B68,B7,B71,B88,B90,B94,B97,C17,C19,C20,C26,C43,C45,C51,C58,C6,C62,C65,C68,C70,C75,C8,C83,C86,D1,D6,D8 |
Chr8:19471473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr8:19471497 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A19,B115,B20,B26,B31,B5,B51,B53,B57,B64,C20,C26,C70,C86,D6,D8 |
Chr8:19473196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784040.1PF00067
p450 89-490 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784040.1 |
Pfam | PF00067 |
p450 | Domain | 89 | 490 | 1.9e-82 | 278.2 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。