Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002197`

染色体: Chr08 坐标: 19871662-19874659 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002197`
名称	SmilChr08G002197
描述	protein DETOXIFICATION 14-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19871662 - 19874659 / `-`

ID 对照

NCBI Gene ID	`LOC131001582`
GeneID	`131001582`
locus_tag	`-`
NCBI Name	`LOC131001582`
原始查询	`LOC131001582`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 14-like
产物	protein DETOXIFICATION 14-like
Arabidopsis	`AT1G71140` (AT1G71140) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:843454] identity=53.2; qcov=0.99; evalue=6.01e-144; confidence=high
Rice	`Os05g0554000` (OsMATE2) - identity=54.9; qcov=0.936; evalue=4.46e-140; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131001582

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057784049.1`
2	Cell membrane	细胞膜	0.80000	`XP_057784047.1`
3	Vacuole membrane	液泡膜	0.80000	`XP_057784049.1`
4	Nucleus	细胞核	0.00000	`XP_057784047.1`
5	Chromosome	染色体	0.00000	`XP_057784047.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19872088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr8:19872232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:19872261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:19873136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:19873162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr8:19873215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:19873272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:19873341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B76
`Chr8:19873455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,C45
`Chr8:19873601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr8:19873609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B42,B53
`Chr8:19873618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B55,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784047.1

479 aa

240

479

MatE

PF01554 MatE 34-193 aa PF01554 MatE 255-416 aa

XP_057784048.1

405 aa

202

405

MatE

PF01554 MatE 5-119 aa PF01554 MatE 181-342 aa

XP_057784049.1

391 aa

196

391

MatE

PF01554 MatE 34-193 aa PF01554 MatE 255-388 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784047.1`	Pfam	`PF01554`	MatE	Family	34	193	1.8e-57	194.3	MatE
`XP_057784047.1`	Pfam	`PF01554`	MatE	Family	255	416	1.8e-57	194.3	MatE
`XP_057784048.1`	Pfam	`PF01554`	MatE	Family	5	119	5.3e-48	163.5	MatE
`XP_057784048.1`	Pfam	`PF01554`	MatE	Family	181	342	5.3e-48	163.5	MatE
`XP_057784049.1`	Pfam	`PF01554`	MatE	Family	34	193	1.5e-50	171.7	MatE
`XP_057784049.1`	Pfam	`PF01554`	MatE	Family	255	388	1.5e-50	171.7	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928065.1
AGGAGTAATAAGAATTGGATTTTATTAGGAAAAAGAATTTGGGGCTACTTAAACATAGAGTGCTGCTAGTAGTGCTACGTTCATTTCATATCATCATCATCATCATCATCATCATCATCCAGTAATTAAGATAAAATAAAATAAAAGTTGGAGCTGTGGCAATGGAGGCGGTGCTGTTGCACGGCGATGATGAAGGGGTTACGCCGTTGAAACGGGAGCTGTTTGTGGCTGAGCTGAAGAAGGTGAGCTACATAGCGGCG...

XM_057928064.1
AATAAGAATTGGATTTTATTAGGAAAAAGAATTTGGGGCTACTTAAACATAGAGTGCTGCTAGTAGTGCTACGTTCATTTCATATCATCATCATCATCATCATCATCATCATCCAGTAATTAAGATAAAATAAAATAAAAGTTGGAGCTGTGGCAATGGAGGCGGTGCTGTTGCACGGCGATGATGAAGGGGTTACGCCGTTGAAACGGGAGCTGTTTGTGGCTGAGCTGAAGAAGGTGAGCTACATAGCGGCGCCAATG...

CDS

3 records

下载 CDS FASTA

LOC131001582
ATGGAGGCGGTGCTGTTGCACGGCGATGATGAAGGGGTTACGCCGTTGAAACGGGAGCTGTTTGTGGCTGAGCTGAAGAAGGTGAGCTACATAGCGGCGCCAATGGTGGTTGTCACCGTCTCTCAAATTCTGCCACGCGTCGTGTCGATGATAATGGTGGGCCACCTCGGTGAGCTCGCACTCTCCGGCGTCGCCGTCGCCACCTCGCTCGCCAACGTCACCGGTCTTAGTCCTCTGTTTGGGTTGGCTAGTGCACTCGA...

LOC131001582
ATGAAATTTCACCTTTTTGGGTTGGCTAGTGCACTCGAAACCTTGTGCGGGCAGGCCTTTGGAGCACAACAGTATGAGAAGCTAGGACTCTATATCAATGCTTCAATTGTATGTCTTCTTCTAGTCTGTTTACCACTCTCTCTTTTATGGATCTTCATGGAAAAATTGCTGATATTTATCGGTCAAGATCCTTCCATTTCTCATGAAGCTGGCCAATATGCTATATGGCTTATCCCTGCATTATTTGGTTATGCTATTCT...

Protein

3 records

下载 Protein FASTA

XP_057784047.1
MEAVLLHGDDEGVTPLKRELFVAELKKVSYIAAPMVVVTVSQILPRVVSMIMVGHLGELALSGVAVATSLANVTGLSPLFGLASALETLCGQAFGAQQYEKLGLYINASIVCLLLVCLPLSLLWIFMEKLLIFIGQDPSISHEAGQYAIWLIPALFGYAILQSLIRYLQTQSLVFPMVWSSIAALVFHVPVCWALVFKANLGTAGAALAIGLCYWFNVILLLLYVNYSSTCKRTRAPFDKNILNGMREFSRFAVPSVVMV...

XP_057784048.1
MKFHLFGLASALETLCGQAFGAQQYEKLGLYINASIVCLLLVCLPLSLLWIFMEKLLIFIGQDPSISHEAGQYAIWLIPALFGYAILQSLIRYLQTQSLVFPMVWSSIAALVFHVPVCWALVFKANLGTAGAALAIGLCYWFNVILLLLYVNYSSTCKRTRAPFDKNILNGMREFSRFAVPSVVMVCLEWWSCEILVLLSGLLPNPQLETSVLSICLLISSLHYFIPYSVGAAASTRVSNELGAGCPERARASVYAAGFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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