Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002154`

染色体: Chr08 坐标: 19431343-19433245 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002154`
名称	SmilChr08G002154
描述	3-ketoacyl-CoA synthase 6-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19431343 - 19433245 / `+`

ID 对照

NCBI Gene ID	`LOC131001584`
GeneID	`131001584`
locus_tag	`-`
NCBI Name	`LOC131001584`
原始查询	`LOC131001584`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-ketoacyl-CoA synthase 6-like
产物	3-ketoacyl-CoA synthase 6-like
Arabidopsis	`AT1G25450` (KCS5) 3-ketoacyl-CoA synthase 5 [Source:NCBI gene (formerly Entrezgene);Acc:839131] identity=78.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0220100` (WSL4) - identity=74.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C)
InterPro	-
eggNOG	-
NR	GeneID:131001584

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057784052.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057784052.1`
3	Nucleus	细胞核	0.00000	`XP_057784052.1`
4	Chromosome	染色体	0.00000	`XP_057784052.1`
5	Centromere	着丝粒	0.00000	`XP_057784052.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19431574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:19431590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B26,B9,C77
`Chr8:19431878`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B71
`Chr8:19431878`	`TC`	`T`	1bp_deletion	CDS_variant	1	B71
`Chr8:19431937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr8:19432264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr8:19432279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:19432395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:19432448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr8:19432562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B26,C77
`Chr8:19432653`	`CG`	`C`	1bp_deletion	frameshift_variant	3	B4,B54,B91
`Chr8:19432653`	`CG`	`C`	1bp_deletion	CDS_variant	3	B4,B54,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784052.1

478 aa

239

478

FAE1_CUT1_RppA

ACP_syn_III_C

Chal_sti_synt_C

PF08392 FAE1_CUT1_RppA 62-351 aa PF08541 ACP_syn_III_C 368-448 aa PF02797 Chal_sti_synt_C 370-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784052.1`	Pfam	`PF08392`	FAE1_CUT1_RppA	Family	62	351	8.9e-138	459.2	FAE1/Type III polyketide synthase-like protein
`XP_057784052.1`	Pfam	`PF08541`	ACP_syn_III_C	Domain	368	448	2.2e-13	50.9	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
`XP_057784052.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	370	441	9.2e-10	39.4	Chalcone and stilbene synthases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928069.1
TTAAACAAAATACATAATTCATCCACCTTTACACCTTAAAAAAAAATAAAAAATCATCCAGCTTTACATTTTAAAAGTTGAGCAGCATATACAAATTATACAACTCCATAGGCCACCGATACAATTTATTACTCCCATATTTCCAACACTTTAAATCCACTCCTCCGCCACCACCACCTCCGCCGCGAAAATGCCGGCGAAACTGAAATACGTAAAACTATGCTACCAATACATGAAAAATCACATCCTAACCTTAGTGT...

CDS

1 records

下载 CDS FASTA

LOC131001584
ATGCCGGCGAAACTGAAATACGTAAAACTATGCTACCAATACATGAAAAATCACATCCTAACCTTAGTGTTGATACCATTAATAATGGGCGCAATCCTCCGATTAAGGCCGGACGAAATGGTGCAAGGCATCCACGTGGAGATGGTTTTGTTGTCCCTGGCGGCGGTGTTTGTGGCGAGCGTGTACCTGATGTCGAAGCCGCGGTCGATTTTCCTGGTGGACTACTCGTGCTACAAGCCGCCGGTGACGCACCGCGTGCC...

Protein

1 records

下载 Protein FASTA

XP_057784052.1
MPAKLKYVKLCYQYMKNHILTLVLIPLIMGAILRLRPDEMVQGIHVEMVLLSLAAVFVASVYLMSKPRSIFLVDYSCYKPPVTHRVPFSTFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPTAIHYIPPTPTMDAAREEAELVIFSAIDSLMDKTGMKPKDIDFLIVNCSLFSPTPSLSAMVVNKYKLRSNIKSYNLSGMGCSAGLISIDLARDLLQVHPNSNALVVSTEILTPNHYKGTERAMLLPNCLFRMGGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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