当前解析结果
SmilChr08G002096| 统一新 Gene ID | SmilChr08G002096 |
|---|---|
| 名称 | SmilChr08G002096 |
| 描述 | protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 18845344 - 18848013 / + |
| NCBI Gene ID | LOC131001585 |
|---|---|
| GeneID | 131001585 |
| locus_tag | - |
| NCBI Name | LOC131001585 |
| 原始查询 | LOC131001585 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic-like |
| 产物 | protein EARLY-RESPONSIVE TO DEHYDRATION 7%2C chloroplastic-like |
| Arabidopsis | AT2G17840 (ERD7)Senescence/dehydration-associated protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816293] identity=57.6; qcov=0.981; evalue=0; confidence=high |
| Rice | Os06g0717100- identity=53.9; qcov=0.861; evalue=1.56e-140; confidence=high |
| GO | GO:0005886 (plasma membrane) |
| KEGG | smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06911 (Senescence) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001585 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057784053.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057784053.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784053.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784053.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784053.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:18845486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B6,D10 |
Chr8:18845491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B114,C37,C63 |
Chr8:18845581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr8:18845608 |
G |
GCT |
2bp_insertion | frameshift_variant | 1 | B48 |
Chr8:18845608 |
G |
GCT |
2bp_insertion | CDS_variant | 1 | B48 |
Chr8:18845615 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B48 |
Chr8:18845615 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B48 |
Chr8:18845749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:18845767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr8:18845812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B81,B95 |
Chr8:18845833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:18845882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784053.1PF06911
Senescence 272-458 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784053.1 |
Pfam | PF06911 |
Senescence | Family | 272 | 458 | 1.5e-49 | 169.1 | Senescence domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。