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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002145

染色体: Chr08 坐标: 19310664-19318308 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002145
名称SmilChr08G002145
描述uncharacterized SmilChr08G002145
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向19310664 - 19318308 / -

ID 对照

NCBI Gene IDLOC131001586
GeneID131001586
locus_tag-
NCBI NameLOC131001586
原始查询LOC131001586

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843103]; symbol=AT1G67780; hit=AT1G67780; species=arabidopsis; confidence=low
产物Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843103]; symbol=AT1G67780; hit=AT1G67780; species=arabidopsis; confidence=low
ArabidopsisAT1G67780 (AT1G67780)
Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843103]
identity=34.4; qcov=1.09; evalue=4.82e-83; confidence=low
RiceOs05g0300700
-
identity=33; qcov=1.1; evalue=2.64e-65; confidence=low
GOGO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
PfamPF10497 (zf-4CXXC_R1)
InterPro-
eggNOG-
NRGeneID:131001586

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057784054.1
2 Chromosome 染色体 0.00000 XP_057784054.1
3 Centromere 着丝粒 0.00000 XP_057784054.1
4 Chromatin 染色质 0.00000 XP_057784054.1
5 Telomere 端粒 0.00000 XP_057784054.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:19315436 C T EMS_canonical_SNV CDS_variant 1 B12
Chr8:19315441 C T EMS_canonical_SNV CDS_variant 3 B136,B28,B77
Chr8:19315491 G A EMS_canonical_SNV CDS_variant 1 B134
Chr8:19315602 C T EMS_canonical_SNV CDS_variant 1 C60
Chr8:19315889 G A EMS_canonical_SNV CDS_variant 1 B107
Chr8:19315936 G A EMS_canonical_SNV CDS_variant 3 B136,B28,B77
Chr8:19317008 G A EMS_canonical_SNV CDS_variant 1 A8
Chr8:19317087 C T EMS_canonical_SNV CDS_variant 4 B137,B40,B9,C84
Chr8:19317250 G A EMS_canonical_SNV CDS_variant 1 B12
Chr8:19317256 C T EMS_canonical_SNV CDS_variant 1 B138
Chr8:19317281 C T EMS_canonical_SNV CDS_variant 1 B12
Chr8:19317403 C T EMS_canonical_SNV CDS_variant 1 C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784054.1
474 aa
N
1
237
474
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784055.1
471 aa
N
1
236
471
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784056.1
465 aa
N
1
232
465
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784057.1
465 aa
N
1
232
465
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784058.1
463 aa
N
1
232
463
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784060.1
462 aa
N
1
231
462
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784061.1
460 aa
N
1
230
460
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784062.1
454 aa
N
1
227
454
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
XP_057784063.1
451 aa
N
1
226
451
zf-4CXXC_R1
C
PF10497 zf-4CXXC_R1 35-131 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784054.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.5 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784055.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.5 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784056.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784057.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784058.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.5e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784060.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.5 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784061.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.6e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784062.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.5e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1
XP_057784063.1 Pfam PF10497 zf-4CXXC_R1 Domain 35 131 1.5e-33 115.6 Zinc-finger domain of monoamine-oxidase A repressor R1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057928077.1
AAACAATCCTACGAGTGTCAGTGACAAACAGTGCCCAAATCAGAAAACTCTTCTCTTGAAGGCGGGAAAAGGAATCGGGAAATATTTTATGCAGAAACCTCCACTCCTCCCAAGATTTAGGGCAAAATTTCCCAATTTAGCGGAGTATTGTATACTGTCGTGCCGGCTTATTTTAGCACCGTCAAAATTCTCCACCCATAGCACCGGCAATTTCAGATTTCAGAACAAGGAAAATCGAATAAAATAAAATAAAAATAAAA...
XM_057928071.1
AAACAATCCTACGAGTGTCAGTGACAAACAGTGCCCAAATCAGAAAACTCTTCTCTTGAAGGCGGGAAAAGGAATCGGGAAATATTTTATGCAGAAACCTCCACTCCTCCCAAGATTTAGGGCAAAATTTCCCAATTTAGCGGAGTATTGTATACTGTCGTGCCGGCTTATTTTAGCACCGTCAAAATTCTCCACCCATAGCACCGGCAATTTCAGATTTCAGAACAAGGAAAATCGAATAAAATAAAATAAAAATAAAA...

CDS

9 records

下载 CDS FASTA
LOC131001586
ATGGCGGTTGAAGCATCTGTAGGTAGCTCAATAGCGTCTCCGTCGGCAAAGCGAGTAAAATCAACCGGAAAATCGGCTGTCGGTAGCCCAGTTAGTGAATCTGGTGACGGGGTGAACTGCCATCAGTGTCGTCGAAAAACCAGGGATATCACAGCAGCGTGCAAGAATCACAGGAAGAATAAACCATGTTTGGTAAAGATATGTAGCAAATGCCTATTGAACAGGTACGGTGAGAAGGTGGAGGAAGTAGCTAGTGTTGA...
LOC131001586
ATGGCGGTTGAAGCATCTGTAGGTAGCTCAATAGCGTCTCCGTCGGCAAAGCGAGTAAAATCAACCGGAAAATCGGCTGTCGGTAGCCCAGTTAGTGAATCTGGTGACGGGGTGAACTGCCATCAGTGTCGTCGAAAAACCAGGGATATCACAGCAGCGTGCAAGAATCACAGGAAGAATAAACCATGTTTGGTAAAGATATGTAGCAAATGCCTATTGAACAGGTACGGTGAGAAGGTGGAGGAAGTAGCTAGTGTTGA...

Protein

9 records

下载 Protein FASTA
XP_057784054.1
MAVEASVGSSIASPSAKRVKSTGKSAVGSPVSESGDGVNCHQCRRKTRDITAACKNHRKNKPCLVKICSKCLLNRYGEKVEEVASVEEWICPKCRGICNCSVCMKRRGHQPTGVLINTAKATGYSSVSEMLISERLHHENVGIATNASLENEVVFSARKRGKENSNDGQLGAHSKKTKRCKSAKTSHIVLPLGTDLTSVAGIDVPAEDVGSALEFLEFCSVFGEILEMKNGEAKYVLQDLLHGRTAKRGRLCPVVLFHMH...
XP_057784055.1
MAVEASVGSSIASPSAKRVKSTGKSAVGSPVSESGDGVNCHQCRRKTRDITAACKNHRKNKPCLVKICSKCLLNRYGEKVEEVASVEEWICPKCRGICNCSVCMKRRGHQPTGVLINTAKATGYSSVSEMLISERLHHENVGIATNASLENEVVFSARKRGKENSNDGQLGAHSKKTKRCKSAKTSHIVLPLGTDLTSVAGIDVPAEDVGSALEFLEFCSVFGEILEMKNGEAKYVLQDLLHGRTAKRGRLCPVVLFHMH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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