Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002102`

染色体: Chr08 坐标: 18883317-18886445 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002102`
名称	SmilChr08G002102
描述	3-dehydroquinate synthase, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18883317 - 18886445 / `+`

ID 对照

NCBI Gene ID	`LOC131001591`
GeneID	`131001591`
locus_tag	`-`
NCBI Name	`LOC131001591`
原始查询	`LOC131001591`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-dehydroquinate synthase, chloroplastic
产物	3-dehydroquinate synthase%2C chloroplastic
Arabidopsis	`AT5G66120` (AT5G66120) 3-dehydroquinate synthase [Source:NCBI gene (formerly Entrezgene);Acc:836744] identity=84.5; qcov=0.872; evalue=0; confidence=high
Rice	`Os09g0539100` (DHQS) - identity=82.9; qcov=0.818; evalue=0; confidence=high
GO	GO:0003856 (3-dehydroquinate synthase activity); GO:0005737 (cytoplasm); GO:0009073 (aromatic amino acid biosynthetic process)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01761 (DHQ_synthase); PF13685 (Fe-ADH_2); PF24621 (DHQS_C)
InterPro	-
eggNOG	-
NR	GeneID:131001591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057784071.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057784071.1`
3	Nucleus	细胞核	0.00000	`XP_057784071.1`
4	Chromosome	染色体	0.00000	`XP_057784071.1`
5	Centromere	着丝粒	0.00000	`XP_057784071.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18883577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B139,C25
`Chr8:18883770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr8:18884656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr8:18884993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B18,B51,C35,D10
`Chr8:18885434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:18885779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C25
`Chr8:18885921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr8:18885936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B2,B24,D7
`Chr8:18885988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C12
`Chr8:18886192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr8:18886207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:18886241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784071.1

444 aa

222

444

Fe-ADH_2

DHQ_synthase

DHQS_C

PF13685 Fe-ADH_2 97-253 aa PF01761 DHQ_synthase 148-260 aa PF24621 DHQS_C 262-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784071.1`	Pfam	`PF13685`	Fe-ADH_2	Family	97	253	1e-07	32.8	Iron-containing alcohol dehydrogenase
`XP_057784071.1`	Pfam	`PF01761`	DHQ_synthase	Domain	148	260	5.2e-49	165.4	3-dehydroquinate synthase N-terminal
`XP_057784071.1`	Pfam	`PF24621`	DHQS_C	Domain	262	406	5.2e-52	176.3	3-dehydroquinate synthase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928088.1
GCTATATGAAAAAGGGGAAAAGAAATAAAAAGAGATTCCTCACCTACCGTATTTGGTTAATTTTGGTGGCATCTTCTTAACATGAAACACACACACACACACAAATTCACCTACCACAGACCACCAAACCAAATCACAATTCACATAAACACCTAACAACAAAATCAAATTCGATTCACAACAATCTCCCAACTCTCAATCCAATCCACTGATCCCCGCGAATGGCTGCTGCTTCTTCTTCCTCTCTCTGCCCTAACGGG...

CDS

1 records

下载 CDS FASTA

LOC131001591
ATGGCTGCTGCTTCTTCTTCCTCTCTCTGCCCTAACGGGGCCCTTTCTATCTCCACCTCTTCCCGCAACCGCCACAGGCAACTGACATCTCTCGTGCGCTTCCCTGCCTCCACTTCGTCCATTTCCTCGGTCTCTCGTGTGTTCTTTGATTCCAAGAACCGTAATTCCGCTGTGAGGGCTTCGGCGACTCCGGTGATGGATCAGTCCACTTCTGCTTCTTCTTCTTCGCCTGCTGTTCCTACAGTTGTCGAGGTCGATTT...

Protein

1 records

下载 Protein FASTA

XP_057784071.1
MAAASSSSLCPNGALSISTSSRNRHRQLTSLVRFPASTSSISSVSRVFFDSKNRNSAVRASATPVMDQSTSASSSSPAVPTVVEVDLGNRSYPIYIGSGLLNQPELLQRHVHGKQVLVVTNTTIAPLYLDKTIWALTEGNPNVNVESVILPDGEKFKNMETLMKVFDKAIETRMDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLVDTDTLNTLPDRELA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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