Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002121`

染色体: Chr08 坐标: 19072973-19075948 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002121`
名称	SmilChr08G002121
描述	G2/mitotic-specific cyclin-2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19072973 - 19075948 / `-`

ID 对照

NCBI Gene ID	`LOC131001594`
GeneID	`131001594`
locus_tag	`-`
NCBI Name	`LOC131001594`
原始查询	`LOC131001594`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G2/mitotic-specific cyclin-2-like
产物	G2/mitotic-specific cyclin-2-like
Arabidopsis	`AT1G20610` (CYCB2;3) Cyclin B2;3 [Source:NCBI gene (formerly Entrezgene);Acc:838650] identity=60.3; qcov=0.911; evalue=8.14e-159; confidence=high
Rice	`Os06g0726800` (cycB2) - identity=55; qcov=0.915; evalue=1.33e-141; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131001594

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784074.1`
2	Chromosome	染色体	0.00000	`XP_057784074.1`
3	Centromere	着丝粒	0.00000	`XP_057784074.1`
4	Chromatin	染色质	0.00000	`XP_057784074.1`
5	Telomere	端粒	0.00000	`XP_057784074.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19073254`	`A`	`ATG`	2bp_insertion	frameshift_variant	205	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A23,A24,A25,A3,A5,A6,A7,A9,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B12,B121,B122,B124,B125,B126,B127,B128,B129,B13,B132,B133,B134,B135,B136,B137,B140,B15,B17,B18,B2,B20,B21,B22,B24,B25,B26,B27,B28,B3,B30,B32,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B53,B55,B57,B58,B59,B60,B61,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B77,B78,B8,B80,B82,B83,B84,B85,B86,B88,B89,B90,B91,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C14,C15,C16,C17,C18,C19,C20,C21,C22,C23,C24,C26,C27,C28,C30,C31,C33,C35,C36,C37,C4,C40,C41,C43,C44,C45,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C59,C6,C60,C62,C63,C64,C65,C67,C69,C7,C70,C71,C72,C73,C74,C76,C77,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D1,D2,D3,D4,D6,D7,D8,D9
`Chr8:19073279`	`T`	`TG`	1bp_insertion	frameshift_variant	179	A1,A10,A11,A13,A18,A19,A2,A20,A23,A24,A25,A3,A5,A6,A7,A9,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B114,B117,B118,B12,B121,B122,B124,B126,B127,B128,B129,B130,B132,B133,B134,B135,B137,B140,B15,B17,B18,B2,B22,B25,B26,B28,B3,B30,B32,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B53,B54,B55,B57,B58,B59,B60,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B77,B78,B8,B80,B82,B83,B84,B88,B89,B9,B91,B92,B93,B95,B97,B98,B99,C1,C10,C11,C12,C14,C15,C16,C17,C18,C20,C21,C22,C23,C24,C25,C26,C30,C31,C33,C36,C37,C40,C41,C42,C43,C45,C47,C48,C50,C51,C52,C53,C54,C56,C59,C6,C60,C62,C63,C65,C68,C69,C7,C70,C71,C73,C76,C77,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D1,D2,D3,D4,D6,D8,D9
`Chr8:19073288`	`G`	`GC`	1bp_insertion	frameshift_variant	180	A1,A10,A11,A13,A15,A18,A19,A2,A20,A23,A24,A25,A3,A5,A6,A7,A9,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B114,B117,B118,B12,B121,B122,B124,B126,B127,B128,B129,B130,B131,B132,B133,B134,B135,B137,B140,B15,B16,B17,B18,B2,B22,B24,B25,B26,B28,B3,B30,B32,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B53,B54,B55,B57,B58,B59,B60,B63,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B77,B78,B8,B80,B82,B83,B84,B88,B89,B9,B91,B92,B95,B97,B98,B99,C1,C10,C11,C12,C14,C15,C16,C17,C18,C20,C21,C22,C23,C24,C25,C26,C30,C31,C33,C36,C37,C40,C41,C42,C43,C45,C47,C48,C50,C51,C52,C53,C54,C56,C59,C6,C60,C62,C63,C65,C68,C69,C7,C70,C71,C73,C76,C77,C79,C8,C80,C81,C82,C83,C86,C87,C9,D1,D2,D3,D4,D6,D8,D9
`Chr8:19073289`	`CT`	`C`	1bp_deletion	frameshift_variant	45	A2,A23,A25,A5,B10,B105,B110,B118,B124,B127,B13,B134,B20,B21,B25,B28,B34,B39,B42,B45,B48,B5,B64,B71,B80,B86,B93,B97,C16,C26,C35,C37,C40,C45,C54,C6,C63,C71,C72,C81,C83,C87,C9,D2,D7
`Chr8:19073321`	`T`	`TGG`	2bp_insertion	frameshift_variant	12	B112,B32,B36,B46,B82,C11,C17,C30,C46,C64,C7,C82
`Chr8:19073326`	`TC`	`T`	1bp_deletion	frameshift_variant	51	A10,A16,A20,A6,A7,A9,B1,B100,B103,B105,B106,B114,B117,B12,B123,B130,B131,B14,B28,B35,B4,B43,B53,B57,B6,B67,B74,B76,B8,B81,B83,B85,B89,B9,B91,B96,C1,C12,C20,C21,C34,C38,C55,C61,C69,C73,C81,C86,D10,D3,D5
`Chr8:19073330`	`GCT`	`G`	2bp_deletion	frameshift_variant	2	A19,C52
`Chr8:19073330`	`GCT`	`G`	2bp_deletion	CDS_variant	2	A19,C52
`Chr8:19073346`	`TGG`	`T`	2bp_deletion	frameshift_variant	9	B130,B14,B4,B81,B9,B96,C38,C55,D10
`Chr8:19073352`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A19,C52
`Chr8:19073352`	`TG`	`T`	1bp_deletion	CDS_variant	2	A19,C52
`Chr8:19073385`	`CCG`	`*`	2bp_deletion	CDS_variant	3	A19,B21,C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784074.1

437 aa

218

437

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 172-298 aa PF02984 Cyclin_C 300-407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784074.1`	Pfam	`PF00134`	Cyclin_N	Domain	172	298	7.8e-49	165.3	Cyclin, N-terminal domain
`XP_057784074.1`	Pfam	`PF02984`	Cyclin_C	Domain	300	407	8.7e-31	107.1	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928091.1
ATTTGAAATAAAAACACCTCTCACTCTTCACTGCTCAAATATCCCTCTCCCACTCAGCTCCCCCTTCTTCCTCTGCTCTCGCATGCCGTCGCTGCTTTAGCACTCGGGGAAACACTAAGCTTTCTCATCTTCTTGTCCGAGAACGAAGCAAATCGAATGGCTATTTCTAATGAGAACAATTCTGTTCAGATTAGACCAACTAATGTGCGGCAAGACATGGAAGGGAGGAAGTTTGGAGGTGAGATCAAAGCTAACAGAAG...

CDS

1 records

下载 CDS FASTA

LOC131001594
ATGGCTATTTCTAATGAGAACAATTCTGTTCAGATTAGACCAACTAATGTGCGGCAAGACATGGAAGGGAGGAAGTTTGGAGGTGAGATCAAAGCTAACAGAAGAGCTCTCGGCGTGATTAATCAGAATTATAATTGTGTTGTCAACAAGAGAGGCTTTGCAGAGTCTAATGGGATTTGTGATAAGAATTGTCCAGTGGCAGCACATAGGCCAATCACAAGGAAATACGCTGCGCAAATGGCAGTCTCGCAGCATCCATG...

Protein

1 records

下载 Protein FASTA

XP_057784074.1
MAISNENNSVQIRPTNVRQDMEGRKFGGEIKANRRALGVINQNYNCVVNKRGFAESNGICDKNCPVAAHRPITRKYAAQMAVSQHPCPEESKKPKTSSSGNEFTVWEDVPLTDAEDNDNGAAMPMSLEQSEIEMSEKNQMEVEMEDIFEETVLDIDGGDAKDPLAVVDYVEDLYASYKKMESSSCVSPCYMAQQFDINERMRAILIDWLIEVHHKFELREETLFLTVNLIDRFLEKQSVVRKKLQLVGLVALLLACKYEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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