Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002120`

染色体: Chr08 坐标: 19066956-19068895 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002120`
名称	SmilChr08G002120
描述	phosphoserine aminotransferase 2, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19066956 - 19068895 / `-`

ID 对照

NCBI Gene ID	`LOC131001600`
GeneID	`131001600`
locus_tag	`-`
NCBI Name	`LOC131001600`
原始查询	`LOC131001600`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoserine aminotransferase 2, chloroplastic-like
产物	phosphoserine aminotransferase 2%2C chloroplastic-like
Arabidopsis	`AT2G17630` (AT2G17630) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816270] identity=77.9; qcov=0.974; evalue=0; confidence=high
Rice	`Os03g0157900` (OJ1134F05.4) - identity=70.1; qcov=0.927; evalue=0; confidence=high
GO	GO:0004648 (O-phospho-L-serine:2-oxoglutarate transaminase activity); GO:0005737 (cytoplasm); GO:0006564 (L-serine biosynthetic process); GO:0009570 (chloroplast stroma); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00750 (Vitamin B6 metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00266 (Aminotran_5)
InterPro	-
eggNOG	-
NR	GeneID:131001600

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057784091.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057784091.1`
3	Nucleus	细胞核	0.00000	`XP_057784091.1`
4	Chromosome	染色体	0.00000	`XP_057784091.1`
5	Centromere	着丝粒	0.00000	`XP_057784091.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19067451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:19067570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C84,C9
`Chr8:19067583`	`CT`	`C`	1bp_deletion	frameshift_variant	18	A22,A9,B102,B12,B15,B28,B40,B43,B61,B71,C12,C24,C25,C32,C34,C38,C70,C82
`Chr8:19067588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19067614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B12,B51
`Chr8:19067617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr8:19067618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B7,B87,C74
`Chr8:19067621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,B43,B71,B87,C82
`Chr8:19067624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B2,B35,B59
`Chr8:19067625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B43,B71,C82
`Chr8:19067632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B19,B21
`Chr8:19067636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C44,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784091.1

422 aa

211

422

Aminotran_5

PF00266 Aminotran_5 61-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784091.1`	Pfam	`PF00266`	Aminotran_5	Domain	61	408	1.3e-45	156.7	Aminotransferase class-V

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928108.1
ATAAATTTCGGTTGGTTTTAAAATTTGTTAAGTACATAATTCGACTCAATTGTGTATAATTATCTGGTAATATAATCCAATTAAATTAGATAAAAGGCTAAACGTAGCCTGACGACTAGTTAATGCTTTCTTGATAAAAAAATAAAAAAATAAAAAAATAAACTTTTGTGGAGATCTGGGATTAGCAAATTTTGGGAGGGGAATATTCATATATTTCTAAATTCACGAAAACATCCATTTTCATTTTTCCCCACCAACCC...

CDS

1 records

下载 CDS FASTA

LOC131001600
ATGTCCGTCTCAATGTCGGCCGCCACCACCCCCCTCACCCACCTCAAACCCGCCGCGGCCAGCCAGATCGCCGCCTTCCCCACCACCCTCTCCTGCCAGACCACCTCTCCCACGAGATCCCTCTCCATCACCTGCTCATCCACAACCCTCCAAACCCCAACATCCGCCGCCACCGATCGCGTCTTCAACTTCGCCGCCGGCCCCGCCACCCTCCCGGAGAACGTCCTCCTCAAGGCCCAATCGGAGCTCTACAACTGGCG...

Protein

1 records

下载 Protein FASTA

XP_057784091.1
MSVSMSAATTPLTHLKPAAASQIAAFPTTLSCQTTSPTRSLSITCSSTTLQTPTSAATDRVFNFAAGPATLPENVLLKAQSELYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRTLLNIPSDYTVLFLQGGATTQFAAIPLNLCNTDDVVDYVVTGSWGDKAFKEAAKYCNPKSIWSGKSEKYTKIPNFDSLEQTPGAKYLHICANETIHGVEFKTYPTPAGENEVLVADMSSNFCSKPVDVTKFGMIYAGAQKNVGPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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