当前解析结果
SmilChr08G002098| 统一新 Gene ID | SmilChr08G002098 |
|---|---|
| 名称 | SmilChr08G002098 |
| 描述 | protein POLLENLESS 3-LIKE 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 18852859 - 18854639 / + |
| NCBI Gene ID | LOC131001603 |
|---|---|
| GeneID | 131001603 |
| locus_tag | - |
| NCBI Name | LOC131001603 |
| 原始查询 | LOC131001603 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein POLLENLESS 3-LIKE 2-like |
| 产物 | protein POLLENLESS 3-LIKE 2-like |
| Arabidopsis | AT3G51280 (AT3G51280)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824291] identity=71.4; qcov=1.04; evalue=0; confidence=high |
| Rice | Os09g0538500- identity=55.9; qcov=1.24; evalue=8.86e-168; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00515 (TPR_1); PF07719 (TPR_2); PF13181 (TPR_8); PF14559 (TPR_19) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001603 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057784102.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057784102.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057784102.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784102.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:18853055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr8:18853355 |
C |
T |
EMS_canonical_SNV | stop_gained | 25 | A3,B101,B119,B122,B132,B136,B138,B19,B25,B46,B70,B83,B88,B95,B99,C14,C15,C17,C24,C30,C33,C37,C48,C50,C78 |
Chr8:18853588 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A11,A3,B101,B108,B135,B139,B18,B32,B33,B42,B46,B49,B52,B64,B9,B99,C13,C14,C2,C23,C63,C64,C66,C69,C83,D10 |
Chr8:18853630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:18853635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,A9 |
Chr8:18853680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr8:18853812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B7,B80,C48 |
Chr8:18853906 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B86,B91,C7 |
Chr8:18853906 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B86,B91,C7 |
Chr8:18854037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr8:18854121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr8:18854126 |
A |
AG |
1bp_insertion | frameshift_variant | 52 | A10,A18,A2,A3,A5,A7,A8,B1,B107,B122,B135,B14,B18,B23,B29,B33,B4,B40,B46,B47,B53,B54,B56,B64,B68,B7,B70,B72,B80,B81,B87,B9,B90,B92,B96,C11,C18,C20,C33,C37,C42,C44,C46,C48,C53,C58,C63,C67,C69,C82,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784102.1PF13181
TPR_8 177-209 aa
PF00515
TPR_1 178-209 aa
PF07719
TPR_2 178-209 aa
PF14559
TPR_19 186-241 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784102.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 177 | 209 | 1.8e-08 | 34.6 | Tetratricopeptide repeat |
XP_057784102.1 |
Pfam | PF00515 |
TPR_1 | Repeat | 178 | 209 | 4.3e-14 | 52.3 | Tetratricopeptide repeat |
XP_057784102.1 |
Pfam | PF07719 |
TPR_2 | Repeat | 178 | 209 | 1.9e-12 | 47.0 | Tetratricopeptide repeat |
XP_057784102.1 |
Pfam | PF14559 |
TPR_19 | Repeat | 186 | 241 | 9.3e-10 | 39.4 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。