Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002118`

染色体: Chr08 坐标: 19052656-19056973 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002118`
名称	SmilChr08G002118
描述	thiol-disulfide oxidoreductase LTO1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19052656 - 19056973 / `-`

ID 对照

NCBI Gene ID	`LOC131001618`
GeneID	`131001618`
locus_tag	`-`
NCBI Name	`LOC131001618`
原始查询	`LOC131001618`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	thiol-disulfide oxidoreductase LTO1-like
产物	thiol-disulfide oxidoreductase LTO1-like
Arabidopsis	`AT4G35760` (LTO1) NAD(P)H dehydrogenase (quinone)s [Source:NCBI gene (formerly Entrezgene);Acc:829729] identity=50; qcov=0.776; evalue=5.08e-93; confidence=high
Rice	`Os03g0131500` - identity=48.7; qcov=0.779; evalue=3.24e-87; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF07884 (VKOR)
InterPro	-
eggNOG	-
NR	GeneID:131001618

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057784129.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057784129.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057784130.1`
4	Chloroplast membrane	叶绿体膜	0.60000	`XP_057784129.1`
5	Nucleus	细胞核	0.00000	`XP_057784129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19053561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B100,B117,B27,C39
`Chr8:19053880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,C21,C36
`Chr8:19053988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B29,B33
`Chr8:19055107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr8:19055328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr8:19055536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:19056391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B131,B2,B24,D7
`Chr8:19056423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B16,B22,C76
`Chr8:19056430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,B94
`Chr8:19056536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B72,B76,C11,C69
`Chr8:19056617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B124,B35,C11,C69
`Chr8:19056772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784129.1

380 aa

190

380

VKOR

PF07884 VKOR 80-215 aa

XP_057784130.1

373 aa

186

373

VKOR

PF07884 VKOR 80-215 aa

XP_057784131.1

353 aa

176

353

VKOR

PF07884 VKOR 80-215 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784129.1`	Pfam	`PF07884`	VKOR	Domain	80	215	2.3e-24	86.7	Vitamin K epoxide reductase family
`XP_057784130.1`	Pfam	`PF07884`	VKOR	Domain	80	215	2.2e-24	86.8	Vitamin K epoxide reductase family
`XP_057784131.1`	Pfam	`PF07884`	VKOR	Domain	80	215	1.9e-24	87.0	Vitamin K epoxide reductase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928147.1
CAGCAAATTCGATGCAAATTTTTAGGAATTTTAAAATTTCAATGCTGTGTTTTCTTCACTTGATTTTACTCGAGCTCAGAACTAGAATCAAGCTACGAATGTTAGTACTGCAACTTGCAGTTTGATCAAAGAAAAGAACTGCTGATAACGAAGATGTCGAGCACCAGCTTCCTCACTAAATCACCGGCGTCTCTTCCCCGGCGGCGAAATCTGCTCCTCACTTCTCCGCTGCGTCCTCAGTTCCCGGCGTCTCTGTTCAA...

XM_057928148.1
CAAATTTTTAGGAATTTTAAAATTTCAATGCTGTGTTTTCTTCACTTGATTTTACTCGAGCTCAGAACTAGAATCAAGCTACGAATGTTAGTACTGCAACTTGCAGTTTGATCAAAGAAAAGAACTGCTGATAACGAAGATGTCGAGCACCAGCTTCCTCACTAAATCACCGGCGTCTCTTCCCCGGCGGCGAAATCTGCTCCTCACTTCTCCGCTGCGTCCTCAGTTCCCGGCGTCTCTGTTCAAGAAAGGCGTTTGTA...

CDS

3 records

下载 CDS FASTA

LOC131001618
ATGTCGAGCACCAGCTTCCTCACTAAATCACCGGCGTCTCTTCCCCGGCGGCGAAATCTGCTCCTCACTTCTCCGCTGCGTCCTCAGTTCCCGGCGTCTCTGTTCAAGAAAGGCGTTTGTAAGCAGAGATTATTGATGCTCAAAGTCAACTGCGGATTGGAGGGGAGCGAACTCACCGCCAAATCCGACTCCTCCGCCGTCGTTGATGAGAATGACGGGGTCTTTTCAGCATACGGATGGTGCGCGGCTCTTGGAGGCCT...

Protein

3 records

下载 Protein FASTA

XP_057784129.1
MSSTSFLTKSPASLPRRRNLLLTSPLRPQFPASLFKKGVCKQRLLMLKVNCGLEGSELTAKSDSSAVVDENDGVFSAYGWCAALGGLGFLETAYLTLVKLANSEALCPIAIGEGSCDAILNSDFASILGVPLPLYGMVAYGLVAILGLGQQLGFQKMPFDVKKTDADTILVGITTSMVVGSTYFLYILSTEFGGESCLYCLTSSALAFSLFLITIKNFGIDRIKEMLGSRLCIASLVIIALAASYNVVQPVSSSLAATEL...

XP_057784130.1
MSSTSFLTKSPASLPRRRNLLLTSPLRPQFPASLFKKGVCKQRLLMLKVNCGLEGSELTAKSDSSAVVDENDGVFSAYGWCAALGGLGFLETAYLTLVKLANSEALCPIAIGEGSCDAILNSDFASILGVPLPLYGMVAYGLVAILGLGQQLGFQKMPFDVKKTDADTILVGITTSMVVGSTYFLYILSTEFGGESCLYCLTSSALAFSLFLITIKNFGIDRIKEMLGSRLCIASLVIIALAASYNVVQPVSSSLAATEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器