Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002024`

染色体: Chr08 坐标: 18050578-18054065 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002024`
名称	SmilChr08G002024
描述	glutamine synthetase cytosolic isozyme
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18050578 - 18054065 / `+`

ID 对照

NCBI Gene ID	`LOC131001629`
GeneID	`131001629`
locus_tag	`-`
NCBI Name	`LOC131001629`
原始查询	`LOC131001629`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamine synthetase cytosolic isozyme
产物	glutamine synthetase cytosolic isozyme
Arabidopsis	`AT5G37600` (GSR 1) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:833738] identity=88.7; qcov=0.992; evalue=0; confidence=high
Rice	`Os02g0735200` (OsGS1) - identity=87; qcov=0.997; evalue=0; confidence=high
GO	GO:0004356 (glutamine synthetase activity); GO:0005737 (cytoplasm); GO:0006542 (GO:0006542)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00120 (Gln-synt_C); PF03951 (Gln-synt_N)
InterPro	-
eggNOG	-
NR	GeneID:131001629

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057784152.1`
2	Cytosol	细胞质基质	0.60000	`XP_057784152.1`
3	Nucleus	细胞核	0.00000	`XP_057784152.1`
4	Chromosome	染色体	0.00000	`XP_057784152.1`
5	Centromere	着丝粒	0.00000	`XP_057784152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18051800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr8:18052149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,A19,A4,B124,B95
`Chr8:18052718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr8:18052743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,D1,D10
`Chr8:18052753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,B46,D11,D6
`Chr8:18052787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:18052840`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B21,C9
`Chr8:18052840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,C9
`Chr8:18052975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,C34,C41
`Chr8:18053129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C35
`Chr8:18053651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784152.1

356 aa

178

356

Gln-synt_N

Gln-synt_C

PF03951 Gln-synt_N 54-97 aa PF00120 Gln-synt_C 168-255 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784152.1`	Pfam	`PF03951`	Gln-synt_N	Domain	54	97	1.4e-08	35.0	Glutamine synthetase, beta-Grasp domain
`XP_057784152.1`	Pfam	`PF00120`	Gln-synt_C	Domain	168	255	3.9e-15	56.5	Glutamine synthetase, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928169.1
GATTCTCTCTCATTAGCATAGTCAGCATTTACCTACCTCGCTCAAGTCTCAAGTCTCAAGTCTCAACAACCAATTTGAGCGATCGTCTCTTGAAAACTCTCCTATAAAGAGCTACTCTCAGCGGCTCACCTCTTTAAGTACAAATAATTCTTCTTCTTGTTAGAGAGAGAGAGAAGGAAAACCGGGTGAATTTCTTGCAAAATGTCGCTGCTTACAGATCTCATCAACCTTAACCTCACAGCATCTACTGATAAGATCAT...

CDS

1 records

下载 CDS FASTA

LOC131001629
ATGTCGCTGCTTACAGATCTCATCAACCTTAACCTCACAGCATCTACTGATAAGATCATTGCTGAATATGTGTGGATTGGTGGCTCTGGTATGGACCTTAGAAGCAAAGCAAGGACTCTTGCTGGCCCTGTTAGCGATCCTTCAAAGCTCCCCAAGTGGAACTACGACGGATCTAGCACGGGCCAAGCTCCCGGAGAGGACAGTGAAGTGATCCTATATCCCCAGGCAATTTTCAGAGATCCATTTAGGAGGGGAAATAA...

Protein

1 records

下载 Protein FASTA

XP_057784152.1
MSLLTDLINLNLTASTDKIIAEYVWIGGSGMDLRSKARTLAGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNNRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKEVKWPLGWPVGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGVSAGDELWIARYILERITEIAGVVVSFDPKPIEGDWNGAGAHTNYSTKSMREE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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