Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002056`

染色体: Chr08 坐标: 18415722-18420797 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002056`
名称	SmilChr08G002056
描述	protein ANTHESIS POMOTING FACTOR 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18415722 - 18420797 / `+`

ID 对照

NCBI Gene ID	`LOC131001637`
GeneID	`131001637`
locus_tag	`-`
NCBI Name	`LOC131001637`
原始查询	`LOC131001637`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ANTHESIS POMOTING FACTOR 1
产物	protein ANTHESIS POMOTING FACTOR 1
Arabidopsis	`AT5G66240` (AT5G66240) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836756] identity=83.1; qcov=0.982; evalue=0; confidence=high
Rice	`Os07g0589400` (OsWD40-146) - identity=73.3; qcov=0.97; evalue=2.07e-176; confidence=high
GO	GO:0003682 (chromatin binding); GO:0005515 (protein binding); GO:0048188 (Set1C/COMPASS complex); GO:0080182 (GO:0080182)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131001637

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784167.1`
2	Chromosome	染色体	0.00000	`XP_057784167.1`
3	Centromere	着丝粒	0.00000	`XP_057784167.1`
4	Chromatin	染色质	0.00000	`XP_057784167.1`
5	Telomere	端粒	0.00000	`XP_057784167.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18416555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B125,C21,C36
`Chr8:18418969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,B47
`Chr8:18419085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr8:18419146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C48
`Chr8:18420244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B108,B71,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784167.1

332 aa

166

332

WD40

PF00400 WD40 34-62 aa PF00400 WD40 112-149 aa PF00400 WD40 258-279 aa

XP_057784168.1

332 aa

166

332

WD40

PF00400 WD40 34-62 aa PF00400 WD40 112-149 aa PF00400 WD40 258-279 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784167.1`	Pfam	`PF00400`	WD40	Repeat	34	62	4.4e-22	78.3	WD domain, G-beta repeat
`XP_057784167.1`	Pfam	`PF00400`	WD40	Repeat	112	149	4.4e-22	78.3	WD domain, G-beta repeat
`XP_057784167.1`	Pfam	`PF00400`	WD40	Repeat	258	279	4.4e-22	78.3	WD domain, G-beta repeat
`XP_057784168.1`	Pfam	`PF00400`	WD40	Repeat	34	62	4.4e-22	78.3	WD domain, G-beta repeat
`XP_057784168.1`	Pfam	`PF00400`	WD40	Repeat	112	149	4.4e-22	78.3	WD domain, G-beta repeat
`XP_057784168.1`	Pfam	`PF00400`	WD40	Repeat	258	279	4.4e-22	78.3	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928185.1
AATCTATTTTGGGCAGAGCTTGAGTGAACAGCGGTGAGCCCACAGTAGCAACTCGGTGGAAATACGTCGACTCTTTCTAGCTTTCTTGTTGTGGTGAGCTCTGTGCACTAATTTGTCCGATTCCCCAGTAGCAAATCTCACAGATTTTCAGTTTAGGGAGAGAAAGGGAGAAGACGAGAGAGGAAGAAGATAAGAGTACACTACAGTAGAAAGAGAAAGAAAGAAAGGGAAGGAAACAGCGGCACTTGAAAGAGAGAGAA...

XM_057928184.1
ATCTATTTTGGGCAGAGCTTGAGTGAACAGCGGTGAGCCCACAGTAGCAACTCGGTGGAAATACGTCGACTCTTTCTAGCTTTCTTGTTGTGGTGAGCTCTGTGCACTAATTTGTCCGATTCCCCAGTAGCAAATCTCACAGATTTTCAGTTTAGGGAGAGAAAGGGAGAAGACGAGAGAGGAAGAAGATAAGAGTACACTACAGTAGAAAGAGAAAGAAAGAAAGGGAAGGAAACAGCGGCACTTGAAAGAGAGAGAAA...

CDS

2 records

下载 CDS FASTA

LOC131001637
ATGGCGGGAGGTCAGTCGGAGAGAGAAGACAAAGTTTCATTGGAACTGACAGAGGAAATCCTTCAGAGCATGGAAGTTGGAATGGCATTCCGCGACTATAATGGAAGAATCAGTTCGATGGATTTCCATAAGACATCAAGTTATTTGGTAACTGCTAGCGATGATGAATCTATTCGTCTCTATGATGTTGCTAGTGCAACATGTTTGAAGACAATCAACAGTAAAAAATATGGGGTTGATCTGGTTAGCTTTACCTCTCA...

Protein

2 records

下载 Protein FASTA

XP_057784167.1
MAGGQSEREDKVSLELTEEILQSMEVGMAFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRNDCFVSGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSLGGDVSEANVVKFSNDGRLMLLTTSNGHIHVLDSFRGTLLSTHNVKPVSSNSTLEASFS...

XP_057784168.1
MAGGQSEREDKVSLELTEEILQSMEVGMAFRDYNGRISSMDFHKTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRNDCFVSGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSLGGDVSEANVVKFSNDGRLMLLTTSNGHIHVLDSFRGTLLSTHNVKPVSSNSTLEASFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器