Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002072`

染色体: Chr08 坐标: 18606855-18610674 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002072`
名称	SmilChr08G002072
描述	protein BASIC PENTACYSTEINE6-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18606855 - 18610674 / `-`

ID 对照

NCBI Gene ID	`LOC131001641`
GeneID	`131001641`
locus_tag	`-`
NCBI Name	`LOC131001641`
原始查询	`LOC131001641`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein BASIC PENTACYSTEINE6-like
产物	protein BASIC PENTACYSTEINE6-like
Arabidopsis	`AT5G42520` (BPC6) basic pentacysteine 6 [Source:NCBI gene (formerly Entrezgene);Acc:834259] identity=45.4; qcov=1.07; evalue=5.98e-88; confidence=high
Rice	`Os06g0130600` - identity=46.3; qcov=1.02; evalue=2.81e-79; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0009723 (response to ethylene); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF06217 (GAGA_bind)
InterPro	-
eggNOG	-
NR	GeneID:131001641

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784176.1`
2	Nucleoplasm	核质	0.20000	`XP_057784176.1`
3	Chromosome	染色体	0.00000	`XP_057784176.1`
4	Centromere	着丝粒	0.00000	`XP_057784176.1`
5	Chromatin	染色质	0.00000	`XP_057784176.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18607139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B135,B35,C61
`Chr8:18607147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:18607516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr8:18607521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr8:18607578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B80
`Chr8:18607699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr8:18607838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A9,B108,B71,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784176.1

305 aa

152

305

GAGA_bind

PF06217 GAGA_bind 10-305 aa

XP_057784177.1

305 aa

152

305

GAGA_bind

PF06217 GAGA_bind 10-305 aa

XP_057784179.1

305 aa

152

305

GAGA_bind

PF06217 GAGA_bind 10-305 aa

XP_057784180.1

305 aa

152

305

GAGA_bind

PF06217 GAGA_bind 10-305 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784176.1`	Pfam	`PF06217`	GAGA_bind	Domain	10	305	1.2e-91	308.7	GAGA binding protein-like family
`XP_057784177.1`	Pfam	`PF06217`	GAGA_bind	Domain	10	305	1.2e-91	308.7	GAGA binding protein-like family
`XP_057784179.1`	Pfam	`PF06217`	GAGA_bind	Domain	10	305	1.2e-91	308.7	GAGA binding protein-like family
`XP_057784180.1`	Pfam	`PF06217`	GAGA_bind	Domain	10	305	1.2e-91	308.7	GAGA binding protein-like family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928193.1
TGGGGTCCGAAAACAGTACCCGGTTCAACTACCCCAGCTAAGGCCCGTACCCGAGTAGACCAATCGGTACACAACGACGTCGTTTCAGTCTCCGAACCACTGAAACGACGCCACTTAGCAGAATTGAATTCCCCAATTCAAAAAGCTCGTTGTGAAAAGAGGCATCTTTTATTCTCTCGCCTGCAACTCGGCGGATAGACACACGCACACTCAGCTCTCTTCTCTCCGGCGAGAAGGGGAGAGGGAGCGGGAAGAGAGAG...

XM_057928197.1
TGGGGTCCGAAAACAGTACCCGGTTCAACTACCCCAGCTAAGGCCCGTACCCGAGTAGACCAATCGGTACACAACGACGTCGTTTCAGTCTCCGAACCACTGAAACGACGCCACTTAGCAGAATTGAATTCCCCAATTCAAAAAGCTCGTTGTGAAAAGAGGCATCTTTTATTCTCTCGCCTGCAACTCGGCGGATAGACACACGCACACTCAGCTCTCTTCTCTCCGGCGAGAAGGGGAGAGGGAGCGGGAAGAGAGAG...

CDS

4 records

下载 CDS FASTA

LOC131001641
ATGATGGACCACAATCACTTGACTATAAAGACCTTTATGGCCATTACGGCCGAGAGAGATGCTGCCATCCGAGAAAGGAACATGGCATTGGAGGAGAGGAAGAGGGCTTTTCAAGAGCGGGATATGGCAATGTTAGAGAGGGACGCTGCAATTGCTGAACGAAACACTGCCATGCAAGAACGGGATGAAGCAATTGCTTCTCTAAGATATCGAGAGAGCTCAATGAACGACAATACCAATATCCCCGATTCATTTGGAAA...

Protein

4 records

下载 Protein FASTA

XP_057784176.1
MMDHNHLTIKTFMAITAERDAAIRERNMALEERKRAFQERDMAMLERDAAIAERNTAMQERDEAIASLRYRESSMNDNTNIPDSFGNELASGGKRIIQYQQQQQMRVSDAAYSPKGNLRGNDIGIAETAETAKPRRGRQTKDKEGKATKSAKPPRAGKRTAEAVIKEEVNSDAYNGWSNEQGLESDEEYLDKQVSWKDNLGLNQINFDESAMPVPVCSCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQVANKRYSRVG...

XP_057784177.1
MMDHNHLTIKTFMAITAERDAAIRERNMALEERKRAFQERDMAMLERDAAIAERNTAMQERDEAIASLRYRESSMNDNTNIPDSFGNELASGGKRIIQYQQQQQMRVSDAAYSPKGNLRGNDIGIAETAETAKPRRGRQTKDKEGKATKSAKPPRAGKRTAEAVIKEEVNSDAYNGWSNEQGLESDEEYLDKQVSWKDNLGLNQINFDESAMPVPVCSCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQVANKRYSRVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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