Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002062`

染色体: Chr08 坐标: 18488845-18492567 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002062`
名称	SmilChr08G002062
描述	transcription initiation factor TFIID subunit 14b
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18488845 - 18492567 / `+`

ID 对照

NCBI Gene ID	`LOC131001658`
GeneID	`131001658`
locus_tag	`-`
NCBI Name	`LOC131001658`
原始查询	`LOC131001658`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor TFIID subunit 14b
产物	transcription initiation factor TFIID subunit 14b
Arabidopsis	`AT5G45600` (GAS41) YEATS family protein [Source:NCBI gene (formerly Entrezgene);Acc:834599] identity=65.3; qcov=0.985; evalue=3.65e-123; confidence=high
Rice	`Os06g0137300` - identity=70.9; qcov=0.917; evalue=6.93e-127; confidence=high
GO	GO:0006355 (regulation of DNA-templated transcription)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF03366 (YEATS); PF20305 (pYEATS)
InterPro	-
eggNOG	-
NR	GeneID:131001658

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784202.1`
2	Nucleoplasm	核质	0.80000	`XP_057784202.1`
3	Cytoplasm	细胞质	0.60000	`XP_057784202.1`
4	Cytosol	细胞质基质	0.20000	`XP_057784202.1`
5	Nuclear body	核内小体	0.20000	`XP_057784203.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18489023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B52,C20,C37
`Chr8:18490662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr8:18490708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B14,B64
`Chr8:18490722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B28,B46,B94,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784202.1

267 aa

134

267

YEATS

pYEATS

PF03366 YEATS 69-148 aa PF20305 pYEATS 72-133 aa

XP_057784203.1

266 aa

133

266

YEATS

pYEATS

PF03366 YEATS 69-148 aa PF20305 pYEATS 72-133 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784202.1`	Pfam	`PF03366`	YEATS	Domain	69	148	4.5e-30	104.2	YEATS family
`XP_057784202.1`	Pfam	`PF20305`	pYEATS	Family	72	133	1.7e-11	44.5	prokaryotic YEATS domain
`XP_057784203.1`	Pfam	`PF03366`	YEATS	Domain	69	148	4.4e-30	104.2	YEATS family
`XP_057784203.1`	Pfam	`PF20305`	pYEATS	Family	72	133	1.7e-11	44.5	prokaryotic YEATS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928219.1
GGGCCCGACAGCCTAAGCCAAGCATGAGTCAAAATCACAAGGCACTAGCGCCAAATGCACTGAAAATATAAACCCTAATTTATTGTCAAAATCCCTAAATCATCTGAAACGAAAATAGCGAAATTCTACTTTGCAGATGCTCGGCAATGGCTGAAATAGTAGAAATTGACGGTCAGCCGGAACGAAATACCAACGAACCCACTCTAAAGCCACAGCGGATCAAAATTACTAGAGCTTCTGACGACGGAGACAAAAAGATT...

XM_057928220.1
CAAGGCACTAGCGCCAAATGCACTGAAAATATAAACCCTAATTTATTGTCAAAATCCCTAAATCATCTGAAACGAAAATAGCGAAATTCTACTTTGCAGATGCTCGGCAATGGCTGAAATAGTAGAAATTGACGGTCAGCCGGAACGAAATACCAACGAACCCACTCTAAAGCCACAGCGGATCAAAATTACTAGAGCTTCTGACGACGGAGACAAAAAGATTTTGCAAAAGAGACTCAAAGATGTTGAAATTTGTGTTC...

CDS

2 records

下载 CDS FASTA

LOC131001658
ATGGCTGAAATAGTAGAAATTGACGGTCAGCCGGAACGAAATACCAACGAACCCACTCTAAAGCCACAGCGGATCAAAATTACTAGAGCTTCTGACGACGGAGACAAAAAGATTTTGCAAAAGAGACTCAAAGATGTTGAAATTTGTGTTCCGATAGTTTATGGGACAATTGCCTTTTGGCTTGGTAGAAAGGCCTCTGAAACTCAGTCACACAGGTGGACTGTCTATGTCCGAGGGGCAACAAATGAGGATATTGGGGT...

Protein

2 records

下载 Protein FASTA

XP_057784202.1
MAEIVEIDGQPERNTNEPTLKPQRIKITRASDDGDKKILQKRLKDVEICVPIVYGTIAFWLGRKASETQSHRWTVYVRGATNEDIGVVIKRAVFQLHPSFENPVRVVESPPFELSECGWGEFEIAISLFFHNDVCEKQLDLYHHLKLYAEDESGPQSAKKPVVVETYNEIVFPDPSESFYARIQKHPAVIVPRLPVMLNLPTEDLNEKKGDTKDNPLSQWFINFSEADELLKLAAARQQVQAHIIKLRRQLSVIDGLPLQ...

XP_057784203.1
MAEIVEIDGQPERNTNEPTLKPQRIKITRASDDGDKKILQKRLKDVEICVPIVYGTIAFWLGRKASETQSHRWTVYVRGATNEDIGVVIKRAVFQLHPSFENPVRVVESPPFELSECGWGEFEIAISLFFHNDVCEKQLDLYHHLKLYAEDESGPQSAKKPVVVETYNEIVFPDPSESFYARIQKHPAVIVPRLPVMLNLPTDLNEKKGDTKDNPLSQWFINFSEADELLKLAAARQQVQAHIIKLRRQLSVIDGLPLQS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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