Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002176

染色体: Chr08 坐标: 19675917-19677640 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002176
名称SmilChr08G002176
描述uncharacterized SmilChr08G002176
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向19675917 - 19677640 / -

ID 对照

NCBI Gene IDLOC131001694
GeneID131001694
locus_tag-
NCBI NameLOC131001694
原始查询LOC131001694

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831474]; symbol=AT5G16160; hit=AT5G16160; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831474]; symbol=AT5G16160; hit=AT5G16160; species=arabidopsis; confidence=medium
ArabidopsisAT5G16160 (AT5G16160)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831474]
identity=42.6; qcov=0.993; evalue=7.46e-22; confidence=medium
RiceOs01g0689600
-
identity=33.9; qcov=0.949; evalue=3.28e-16; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131001694

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057784254.1
2 Nucleoplasm 核质 0.40000 XP_057784254.1
3 Chromosome 染色体 0.00000 XP_057784255.1
4 Centromere 着丝粒 0.00000 XP_057784255.1
5 Chromatin 染色质 0.00000 XP_057784255.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:19676481 T TA 1bp_insertion frameshift_variant 105 A1,A10,A19,A5,A7,B1,B10,B100,B102,B103,B105,B106,B107,B110,B113,B115,B118,B119,B123,B124,B126,B128,B131,B133,B135,B139,B140,B15,B17,B19,B2,B22,B25,B26,B3,B35,B36,B38,B39,B44,B45,B47,B48,B49,B50,B51,B52,B55,B57,B59,B60,B61,B70,B71,B72,B76,B77,B81,B85,B87,B90,B91,B92,B97,C1,C10,C12,C14,C15,C17,C18,C19,C20,C23,C24,C25,C26,C27,C3,C33,C34,C35,C38,C40,C46,C52,C53,C55,C56,C58,C61,C62,C71,C73,C74,C8,C80,C81,C82,C83,C85,D11,D3,D6,D9
Chr8:19676513 C T EMS_canonical_SNV CDS_variant 1 B13
Chr8:19676613 G A EMS_canonical_SNV CDS_variant 2 C23,C85
Chr8:19676629 G A EMS_canonical_SNV CDS_variant 1 A18

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928272.1
ATGCACACGCCATCTATTTCTTAATAATGCTTACCTAGGCTATTTATTTTCTACAAACTCTAATTTTTGTTTATTTGTTTATTTTTTGAGAGAATTCGACAAACTCTAGTTAGGCATATAAGAAACCAAACGGAAAGAAATTACAGAGTGAGAATGGAAAGAGGGAGCCGCGAAGAAGCAGACGAAAGGAGAGAAGCAGTTATATCCTCAGCGACTTCTTTACGCCCCAATTTCAAGCCCAATCCTGGAATTACTGAATC...
XM_057928271.1
CAAACTCTAATTTTTGTTTATTTGTTTATTTTTTGAGAGAATTCGACAAACTCTAGTTAGGCATATAAGAAACCAAACGGAAAGAAATTACAGAGTGAGAATGGAAAGAGGGAGCCGCGAAGAAGCAGACGAAAGGAGAGAAGCAGTTATATCCTCAGCGACTTCTTTACGCCCCAATTTCAAGCCCAATCCTGGAATTACTGAATCGCAGCTCTCCAAATTTCAGGAATTGCATAGGAGGCGTTTACAAATCAAAGCCA...

CDS

2 records

下载 CDS FASTA
LOC131001694
ATGGAAAGAGGGAGCCGCGAAGAAGCAGACGAAAGGAGAGAAGCAGTTATATCCTCAGCGACTTCTTTACGCCCCAATTTCAAGCCCAATCCTGGAATTACTGAATCGCAGCTCTCCAAATTTCAGGAATTGCATAGGAGGCGTTTACAAATCAAAGCCAAATCTAAAATACACAAGCGAGACAAAGGAGCTGATGGGAAAGGGAAGACCCACAAGAAGCTTGCTGAAATTCAGGAAAGCTCCGACCAAGAACCAAGTAA...
LOC131001694
ATGGAAAGAGGGAGCCGCGAAGAAGCAGACGAAAGGAGAGAAGCAGTTATATCCTCAGCGACTTCTTTACGCCCCAATTTCAAGCCCAATCCTGGAATTACTGAATCGCAGCTCTCCAAATTTCAGGAATTGCATAGGAGGCGTTTACAAATCAAAGCCAAATCTAAAATACACAAGCGAGACAAAGGAGCTGATGGGAAAGGGAAGACCCACAAGAAGCTTGCTGAAATTCAGGAAAGCTCCGACCAAGAACCAAGTAA...

Protein

2 records

下载 Protein FASTA
XP_057784254.1
MERGSREEADERREAVISSATSLRPNFKPNPGITESQLSKFQELHRRRLQIKAKSKIHKRDKGADGKGKTHKKLAEIQESSDQEPSKPTTMDGTGDLKPENRVGNASCGVDNVAAKTRHKLYWGYSQALIHNYLSVFLCSLNNWER
XP_057784255.1
MERGSREEADERREAVISSATSLRPNFKPNPGITESQLSKFQELHRRRLQIKAKSKIHKRDKGADGKGKTHKKLAEIQESSDQEPSKPTTMDGTGDLKPENRVGNASCGVDNVAAKTRHKLYWGLDTKERWERKSNM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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