当前解析结果
SmilChr08G002198| 统一新 Gene ID | SmilChr08G002198 |
|---|---|
| 名称 | SmilChr08G002198 |
| 描述 | protein DETOXIFICATION 14-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 19909508 - 19911842 / - |
| NCBI Gene ID | LOC131001732 |
|---|---|
| GeneID | 131001732 |
| locus_tag | - |
| NCBI Name | LOC131001732 |
| 原始查询 | LOC131001732 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 14-like |
| 产物 | protein DETOXIFICATION 14-like |
| Arabidopsis | AT1G71140 (AT1G71140)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:843454] identity=54.5; qcov=0.929; evalue=8.62e-175; confidence=high |
| Rice | Os01g0684900- identity=54.9; qcov=0.968; evalue=1.91e-176; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057784276.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057784276.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057784276.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784276.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784276.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:19910209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B94 |
Chr8:19910259 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | C8 |
Chr8:19910259 |
T |
TA |
1bp_insertion | CDS_variant | 1 | C8 |
Chr8:19910472 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | A9,B21,C19 |
Chr8:19910472 |
G |
GA |
1bp_insertion | CDS_variant | 3 | A9,B21,C19 |
Chr8:19910709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:19910984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr8:19911277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr8:19911474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr8:19911523 |
G |
GGA |
2bp_insertion | frameshift_variant | 1 | B39 |
Chr8:19911523 |
G |
GGA |
2bp_insertion | CDS_variant | 1 | B39 |
Chr8:19911589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,C12,C40,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784276.1PF01554
MatE 28-187 aa
PF01554
MatE 249-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784276.1 |
Pfam | PF01554 |
MatE | Family | 28 | 187 | 9.8e-56 | 188.6 | MatE |
XP_057784276.1 |
Pfam | PF01554 |
MatE | Family | 249 | 411 | 9.8e-56 | 188.6 | MatE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。