Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002226`

染色体: Chr08 坐标: 20309153-20312917 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002226`
名称	SmilChr08G002226
描述	transcription factor MYB114-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	20309153 - 20312917 / `-`

ID 对照

NCBI Gene ID	`LOC131001757`
GeneID	`131001757`
locus_tag	`-`
NCBI Name	`LOC131001757`
原始查询	`LOC131001757`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MYB114-like
产物	transcription factor MYB114-like
Arabidopsis	`AT1G66370` (MYB113) myb domain protein 113 [Source:NCBI gene (formerly Entrezgene);Acc:842955] identity=62.9; qcov=0.591; evalue=9.07e-61; confidence=medium
Rice	`Os03g0410000` (OsMyb3) - identity=65.4; qcov=0.442; evalue=1.13e-44; confidence=low
GO	-
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131001757

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784306.1`
2	Chromosome	染色体	0.00000	`XP_057784306.1`
3	Centromere	着丝粒	0.00000	`XP_057784306.1`
4	Chromatin	染色质	0.00000	`XP_057784306.1`
5	Telomere	端粒	0.00000	`XP_057784306.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:20309308`	`GTT`	`G`	2bp_deletion	frameshift_variant	1	B131
`Chr8:20309308`	`GTT`	`G`	2bp_deletion	CDS_variant	1	B131
`Chr8:20309473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:20309504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:20309669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:20312561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B130,C50
`Chr8:20312586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784306.1

271 aa

136

271

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 44-91 aa PF13921 Myb_DNA-bind_6 47-105 aa PF00249 Myb_DNA-binding 98-141 aa PF13921 Myb_DNA-bind_6 100-144 aa

XP_057784307.1

242 aa

121

242

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 15-62 aa PF13921 Myb_DNA-bind_6 18-76 aa PF00249 Myb_DNA-binding 69-112 aa PF13921 Myb_DNA-bind_6 71-115 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784306.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	44	91	1.3e-32	112.3	Myb-like DNA-binding domain
`XP_057784306.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	47	105	1.9e-18	67.1	Myb-like DNA-binding domain
`XP_057784306.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	98	141	1.3e-32	112.3	Myb-like DNA-binding domain
`XP_057784306.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	100	144	1.9e-18	67.1	Myb-like DNA-binding domain
`XP_057784307.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	15	62	9.7e-33	112.8	Myb-like DNA-binding domain
`XP_057784307.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	18	76	1.4e-18	67.5	Myb-like DNA-binding domain
`XP_057784307.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	69	112	9.7e-33	112.8	Myb-like DNA-binding domain
`XP_057784307.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	71	115	1.4e-18	67.5	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928323.1
GTGGGACATCATTCCATAATTAAGTATCCTAACGTTGGGGGAAGGGGCGGTTGTGTGGATGGGAAAGGTTACACGTTGGGTTAGATCTATGATGGGTGGGAGTGATGAAAGCTCGAAAAGCGATCCGTTTTGTTGTCTCGACGAAATGGAAAATACTAATAATAGTAATAATGGAGTGGGAGTGAGGAAAGGTGCGTGGACCAAAGAGGAAGATGTTCTTCTCAGAGACTGTGTTCATAAATATGGAGAGGGGAAATGGC...

XM_057928324.1
CGATGCATGGGATATAAATCTCGAAAAGCGATCCGTTTTGTTGTCTCGACGAAATGGAAAATACTAATAATAGTAATAATGGAGTGGGAGTGAGGAAAGGTGCGTGGACCAAAGAGGAAGATGTTCTTCTCAGAGACTGTGTTCATAAATATGGAGAGGGGAAATGGCATCTCGTCCCTCTCAGAGCTGGATTGAAGAGATGTAGGAAGAGTTGCAGGCTGAGATGGCTCAACTATCTCAGACCTAATCTCAAAAGAGGC...

CDS

2 records

下载 CDS FASTA

LOC131001757
ATGGGAAAGGTTACACGTTGGGTTAGATCTATGATGGGTGGGAGTGATGAAAGCTCGAAAAGCGATCCGTTTTGTTGTCTCGACGAAATGGAAAATACTAATAATAGTAATAATGGAGTGGGAGTGAGGAAAGGTGCGTGGACCAAAGAGGAAGATGTTCTTCTCAGAGACTGTGTTCATAAATATGGAGAGGGGAAATGGCATCTCGTCCCTCTCAGAGCTGGATTGAAGAGATGTAGGAAGAGTTGCAGGCTGAGATG...

LOC131001757
ATGGAAAATACTAATAATAGTAATAATGGAGTGGGAGTGAGGAAAGGTGCGTGGACCAAAGAGGAAGATGTTCTTCTCAGAGACTGTGTTCATAAATATGGAGAGGGGAAATGGCATCTCGTCCCTCTCAGAGCTGGATTGAAGAGATGTAGGAAGAGTTGCAGGCTGAGATGGCTCAACTATCTCAGACCTAATCTCAAAAGAGGCTTCTTTACTAAAGATGAAGTCGATCTCATCGTCAGGCTTCATAAATTGTTAGG...

Protein

2 records

下载 Protein FASTA

XP_057784306.1
MGKVTRWVRSMMGGSDESSKSDPFCCLDEMENTNNSNNGVGVRKGAWTKEEDVLLRDCVHKYGEGKWHLVPLRAGLKRCRKSCRLRWLNYLRPNLKRGFFTKDEVDLIVRLHKLLGNRWSLIAGRLSGRTANDVKNFWNSHISKRAVEGVKSITKSNIVRPRPRTFSNARPPVWSTQLTGSNSSSSTTKHTNHDPTEANDGVENPNMERRSSLLEEDLDECMRLWGDLLMMTENNSFQLSNGEIADQDRLCDDLSFDADM...

XP_057784307.1
MENTNNSNNGVGVRKGAWTKEEDVLLRDCVHKYGEGKWHLVPLRAGLKRCRKSCRLRWLNYLRPNLKRGFFTKDEVDLIVRLHKLLGNRWSLIAGRLSGRTANDVKNFWNSHISKRAVEGVKSITKSNIVRPRPRTFSNARPPVWSTQLTGSNSSSSTTKHTNHDPTEANDGVENPNMERRSSLLEEDLDECMRLWGDLLMMTENNSFQLSNGEIADQDRLCDDLSFDADMVWNLDNLQTNH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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