Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002239`

染色体: Chr08 坐标: 20545763-20550075 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002239`
名称	SmilChr08G002239
描述	glycine-rich domain-containing protein 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	20545763 - 20550075 / `+`

ID 对照

NCBI Gene ID	`LOC131001769`
GeneID	`131001769`
locus_tag	`-`
NCBI Name	`LOC131001769`
原始查询	`LOC131001769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycine-rich domain-containing protein 1-like
产物	glycine-rich domain-containing protein 1-like
Arabidopsis	`AT4G37900` (AT4G37900) - identity=51.8; qcov=0.801; evalue=0; confidence=high
Rice	`Os11g0621300` - identity=42; qcov=0.878; evalue=0; confidence=medium
GO	-
KEGG	-
Pfam	PF07173 (GRDP-like); PF25334 (C2_GRDP); PF25335 (GRDP_C)
InterPro	-
eggNOG	-
NR	GeneID:131001769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057784320.1`
2	Cell membrane	细胞膜	0.20000	`XP_057784320.1`
3	Nucleus	细胞核	0.00000	`XP_057784320.1`
4	Chromosome	染色体	0.00000	`XP_057784320.1`
5	Centromere	着丝粒	0.00000	`XP_057784320.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:20546272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:20546322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C73
`Chr8:20546330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:20546355`	`GC`	`G`	1bp_deletion	frameshift_variant	33	A7,B102,B109,B115,B119,B123,B127,B133,B134,B14,B18,B22,B25,B3,B34,B41,B45,B59,B65,B80,B82,B88,B89,C16,C25,C35,C39,C49,C53,C70,C74,C79,C86
`Chr8:20546787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:20546795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr8:20546812`	`AT`	`A`	1bp_deletion	frameshift_variant	12	A19,A23,B114,B15,B25,B49,B57,C15,C32,C47,C52,C68
`Chr8:20546838`	`G`	`A`	EMS_canonical_SNV	stop_gained	36	A16,A3,A5,B11,B117,B12,B121,B127,B134,B140,B18,B26,B29,B32,B4,B54,B66,B7,B71,B78,B79,B8,B80,B81,C23,C35,C4,C46,C62,C63,C67,C71,C80,C9,D2,D6
`Chr8:20546847`	`A`	`AC`	1bp_insertion	frameshift_variant	142	A1,A11,A13,A14,A19,A21,A22,A23,A25,A4,A6,A8,A9,B10,B106,B107,B108,B109,B110,B112,B113,B114,B117,B12,B120,B125,B130,B131,B133,B136,B137,B139,B14,B15,B16,B19,B2,B20,B21,B23,B25,B27,B28,B29,B30,B31,B36,B38,B39,B4,B46,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B66,B67,B68,B69,B7,B74,B75,B77,B79,B82,B83,B85,B86,B87,B9,B91,B93,B96,B99,C10,C13,C15,C18,C19,C20,C21,C23,C24,C25,C28,C29,C30,C32,C33,C34,C36,C37,C38,C39,C41,C43,C44,C47,C48,C49,C5,C50,C52,C54,C55,C56,C57,C6,C60,C61,C64,C65,C66,C67,C68,C72,C73,C74,C76,C77,C79,C81,C84,C85,C86,C9,D11,D3,D4,D6,D7
`Chr8:20546854`	`CAG`	`C`	2bp_deletion	frameshift_variant	8	B131,B24,B38,B39,C12,C14,C22,C46
`Chr8:20546983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:20547328`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784320.1

803 aa

402

803

GRDP-like

C2_GRDP

GRDP_C

PF07173 GRDP-like 12-98 aa PF07173 GRDP-like 94-237 aa PF25334 C2_GRDP 322-445 aa PF25335 GRDP_C 475-607 aa

XP_057784321.1

803 aa

402

803

GRDP-like

C2_GRDP

GRDP_C

PF07173 GRDP-like 12-98 aa PF07173 GRDP-like 94-237 aa PF25334 C2_GRDP 322-445 aa PF25335 GRDP_C 475-607 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784320.1`	Pfam	`PF07173`	GRDP-like	Family	12	98	6.1e-61	206.0	Glycine-rich domain-containing protein-like
`XP_057784320.1`	Pfam	`PF07173`	GRDP-like	Family	94	237	6.1e-61	206.0	Glycine-rich domain-containing protein-like
`XP_057784320.1`	Pfam	`PF25334`	C2_GRDP	Domain	322	445	3.9e-52	176.6	C2 domain of glycine-rich domain-containing protein
`XP_057784320.1`	Pfam	`PF25335`	GRDP_C	Domain	475	607	9.5e-31	107.6	Glycine Rich Domain Protein C-terminal domain
`XP_057784321.1`	Pfam	`PF07173`	GRDP-like	Family	12	98	6.1e-61	206.0	Glycine-rich domain-containing protein-like
`XP_057784321.1`	Pfam	`PF07173`	GRDP-like	Family	94	237	6.1e-61	206.0	Glycine-rich domain-containing protein-like
`XP_057784321.1`	Pfam	`PF25334`	C2_GRDP	Domain	322	445	3.9e-52	176.6	C2 domain of glycine-rich domain-containing protein
`XP_057784321.1`	Pfam	`PF25335`	GRDP_C	Domain	475	607	9.5e-31	107.6	Glycine Rich Domain Protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928337.1
AGAGTAGGTATTTTACGTTATGTAAGAGGGTACTTTCGTCCTTCTACTGGTACACCCGAGCTCGTACTCATGCAAAATACTATAAATACCGAACATTTCAGCGATTATTGTTCATCCGAATATCCACTACTATAATCGTGAAGGAGAAAGTTGCAGTAAAATTTCCTTCGTTTTTCCGTAGTTGAAAGCTGTTGAGAATGGAGAAGCAGCAGAAGTTGGAATGGGAAGCAGCACATAGCATTGCGATCAATGTCGACCTT...

XM_057928338.1
AGAGTAGGTATTTTACGTTATGTAAGAGGGTACTTTCGTCCTTCTACTGGTACACCCGAGCTCGTACTCATGCAAAATACTATAAATACCGAACATTTCAGCGATTATTGTTCATCCGAATATCCACTACTATAATCGTGAAGGAGAAAGTTGCAGTAAAATTTCCTTCGTTTTTCCGTTGAAAGCTGTTGAGAATGGAGAAGCAGCAGAAGTTGGAATGGGAAGCAGCACATAGCATTGCGATCAATGTCGACCTTGTT...

CDS

2 records

下载 CDS FASTA

LOC131001769
ATGGAGAAGCAGCAGAAGTTGGAATGGGAAGCAGCACATAGCATTGCGATCAATGTCGACCTTGTTTCCGCGGCAAAAAAGCAGCTCAAGTTTCTCGCGGCTGTTGATCGGAACCGTTGGCTCTATGCCGGCCCCGGTCTAGATAGGGCCATTTACAGGTACAAAGTTTATTGGCTTCCATTGCTGGCGAAGCATTCTGAATCGCCACTTTTTGAAGGTTCATTGGTTGTCCCTTTGGATTGTGAATGGATTTGGCACTC...

Protein

2 records

下载 Protein FASTA

XP_057784320.1
MEKQQKLEWEAAHSIAINVDLVSAAKKQLKFLAAVDRNRWLYAGPGLDRAIYRYKVYWLPLLAKHSESPLFEGSLVVPLDCEWIWHSHRLNPIRYKKDCEEFYGRIIDNKNVISSVEGTSKKQTEDVWKTLFPGEPFELDLELQQENISGQGVVEEKFTKYDLVSAVQRQTPFFHQVSQLHMNDSRYIEGAVARYRGFLHLIKRNKEQGIKSFVVPTYDIDLIWHTHQLHPASYGEDLLKLMGRILEHDDTDSDRTKGQK...

XP_057784321.1
MEKQQKLEWEAAHSIAINVDLVSAAKKQLKFLAAVDRNRWLYAGPGLDRAIYRYKVYWLPLLAKHSESPLFEGSLVVPLDCEWIWHSHRLNPIRYKKDCEEFYGRIIDNKNVISSVEGTSKKQTEDVWKTLFPGEPFELDLELQQENISGQGVVEEKFTKYDLVSAVQRQTPFFHQVSQLHMNDSRYIEGAVARYRGFLHLIKRNKEQGIKSFVVPTYDIDLIWHTHQLHPASYGEDLLKLMGRILEHDDTDSDRTKGQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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