Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002242`

染色体: Chr08 坐标: 20565864-20575293 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002242`
名称	SmilChr08G002242
描述	uncharacterized SmilChr08G002242
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	20565864 - 20575293 / `+`

ID 对照

NCBI Gene ID	`LOC131001771`
GeneID	`131001771`
locus_tag	`-`
NCBI Name	`LOC131001771`
原始查询	`LOC131001771`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0191000; species=rice; confidence=low
产物	hit=Os04g0191000; species=rice; confidence=low
Arabidopsis	`ATMG00860` - identity=37.1; qcov=0.073; evalue=1.92e-19; confidence=weak
Rice	`Os04g0191000` - identity=29.2; qcov=0.486; evalue=5.48e-90; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2)
InterPro	-
eggNOG	-
NR	GeneID:131001771

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057784322.1`
2	Nucleus	细胞核	0.40000	`XP_057784322.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057784322.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057784322.1`
5	Chromosome	染色体	0.00000	`XP_057784322.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:20567358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,C11,C40,C69
`Chr8:20567393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr8:20567457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B55,C28,D9
`Chr8:20567463`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B45,C9,D3,D9
`Chr8:20567469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,B16,B97,B99,C61
`Chr8:20567699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,C11,C69
`Chr8:20567771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr8:20568072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr8:20568141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr8:20568163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C24
`Chr8:20568174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,B86
`Chr8:20568224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784322.1

1816 aa

908

1816

Asp_protease_2

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF13650 Asp_protease_2 633-727 aa PF00078 RVT_1 992-1147 aa PF17919 RT_RNaseH_2 1211-1309 aa PF17917 RT_RNaseH 1239-1339 aa PF17921 Integrase_H2C2 1439-1496 aa PF00665 rve 1517-1610 aa

XP_057784324.1

1816 aa

908

1816

Asp_protease_2

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF13650 Asp_protease_2 633-727 aa PF00078 RVT_1 992-1147 aa PF17919 RT_RNaseH_2 1211-1309 aa PF17917 RT_RNaseH 1239-1339 aa PF17921 Integrase_H2C2 1439-1496 aa PF00665 rve 1517-1610 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784322.1`	Pfam	`PF13650`	Asp_protease_2	Domain	633	727	3.9e-06	28.2	Aspartyl protease
`XP_057784322.1`	Pfam	`PF00078`	RVT_1	Domain	992	1147	1.7e-29	103.9	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057784322.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1211	1309	2.7e-32	111.5	RNase H-like domain found in reverse transcriptase
`XP_057784322.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1239	1339	6.1e-37	126.7	RNase H-like domain found in reverse transcriptase
`XP_057784322.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1439	1496	6.5e-12	46.1	Integrase zinc binding domain
`XP_057784322.1`	Pfam	`PF00665`	rve	Domain	1517	1610	9.6e-17	61.8	Integrase core domain
`XP_057784324.1`	Pfam	`PF13650`	Asp_protease_2	Domain	633	727	3.9e-06	28.2	Aspartyl protease
`XP_057784324.1`	Pfam	`PF00078`	RVT_1	Domain	992	1147	1.7e-29	103.9	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057784324.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1211	1309	2.7e-32	111.5	RNase H-like domain found in reverse transcriptase
`XP_057784324.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1239	1339	6.1e-37	126.7	RNase H-like domain found in reverse transcriptase
`XP_057784324.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1439	1496	6.5e-12	46.1	Integrase zinc binding domain
`XP_057784324.1`	Pfam	`PF00665`	rve	Domain	1517	1610	9.6e-17	61.8	Integrase core domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009094027.1
GGGCGTATTTATACGCATTTATTTGGAGGATTTTAGTATGTTTTCAATGCTTAATTCGTGTTAAATATCATCTTTTGGATATGGATTATGGTCTTATGTGAATTTTGATGGTATTTAATAGGTTTTGAAGAAAAGACATGATTTTGAGAAGAATTTTGAAGCTTGAAGTGGTAGAGAATGAAGGCTGTGCGGACAAAGATTAATGGGCTGGATCTTTGATTATTATTAGCTGATCATATTTAAATTGTTTTGGGATTGGG...

XM_057928339.1
GATTGGGCGTATTTATACGCATTTATTTGGAGGATTTTAGTTTTGAAGAAAAGACATGATTTTGAGAAGAATTTTGAAGCTTGAAGTGGTAGAGAATGAAGGCTGTGCGGACAAAGATTAATGGGCTGGATCTTTGATTATTATTAGCTGATCATATTTAAATTGTTTTGGGATTGGGAATAGTTCCAAATTTGGACCTTTGCACCACTTTTCCCTATTAGCTTTTACGTCATTAGACTAGTTGCCTAGTTGCCTAATTA...

CDS

2 records

下载 CDS FASTA

LOC131001771
ATGCCCCGTTCTTCTCGTACAGGCGTATTAGTTTTTGATCCAGAAATCGAGAAGACCGCACGAAAGTTGAAGAAGCAAGCTAAGGAGTGGAAAAAGAGATCCAATTCTGCTCCACCGAGCCTTGAGGATCAAGAAGAAATTGAAGTTCCAATGGGTGACCGTAACAATAGGGATGAGGAGAACGATAGAGAGATCGTTGATCCTCGACAGGAACCACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAACAATCGCCC...

Protein

2 records

下载 Protein FASTA

XP_057784322.1
MPRSSRTGVLVFDPEIEKTARKLKKQAKEWKKRSNSAPPSLEDQEEIEVPMGDRNNRDEENDREIVDPRQEPPQLIRELGRHRNNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKT...

XP_057784324.1
MPRSSRTGVLVFDPEIEKTARKLKKQAKEWKKRSNSAPPSLEDQEEIEVPMGDRNNRDEENDREIVDPRQEPPQLIRELGRHRNNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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