当前解析结果
SmilChr08G002245| 统一新 Gene ID | SmilChr08G002245 |
|---|---|
| 名称 | SmilChr08G002245 |
| 描述 | probable beta-D-xylosidase 6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20616212 - 20619916 / - |
| NCBI Gene ID | LOC131001773 |
|---|---|
| GeneID | 131001773 |
| locus_tag | - |
| NCBI Name | LOC131001773 |
| 原始查询 | LOC131001773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable beta-D-xylosidase 6 |
| 产物 | probable beta-D-xylosidase 6 |
| Arabidopsis | AT5G10560 (AT5G10560)Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830921] identity=62; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0530700- identity=59.7; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0009044 (xylan 1,4-beta-xylosidase activity); GO:0009505 (plant-type cell wall); GO:0031222 (arabinan catabolic process); GO:0045493 (xylan catabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity) |
| KEGG | - |
| Pfam | PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C); PF14310 (Fn3-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001773 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057784335.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057784335.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784335.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784335.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784335.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20616456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:20616464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B136,B46,B94,C24 |
Chr8:20616479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr8:20616501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C14 |
Chr8:20616616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr8:20616629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,B22 |
Chr8:20616817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:20617091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:20617118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:20619221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,C5 |
Chr8:20619307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,B86,C83 |
Chr8:20619379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,C42,C76,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784335.1PF00933
Glyco_hydro_3 108-369 aa
PF01915
Glyco_hydro_3_C 416-645 aa
PF14310
Fn3-like 708-770 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784335.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 108 | 369 | 2.8e-29 | 103.3 | Glycosyl hydrolase family 3 N terminal domain |
XP_057784335.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 416 | 645 | 3.2e-49 | 168.3 | Glycosyl hydrolase family 3 C-terminal domain |
XP_057784335.1 |
Pfam | PF14310 |
Fn3-like | Family | 708 | 770 | 3e-09 | 37.6 | Fibronectin type III-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。