Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002267`

染色体: Chr08 坐标: 20925664-20933054 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002267`
名称	SmilChr08G002267
描述	uncharacterized SmilChr08G002267
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	20925664 - 20933054 / `-`

ID 对照

NCBI Gene ID	`LOC131001791`
GeneID	`131001791`
locus_tag	`-`
NCBI Name	`LOC131001791`
原始查询	`LOC131001791`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683]; symbol=AT2G21440; hit=AT2G21440; species=arabidopsis; confidence=high
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683]; symbol=AT2G21440; hit=AT2G21440; species=arabidopsis; confidence=high
Arabidopsis	`AT2G21440` (AT2G21440) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816683] identity=45.8; qcov=1.11; evalue=0; confidence=high
Rice	`Os03g0801800` - identity=50.1; qcov=0.821; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131001791

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784366.1`
2	Nucleolus	核仁	1.00000	`XP_057784366.1`
3	Nucleolus rim	Nucleolus rim	0.80000	`XP_057784366.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057784366.1`
5	Nucleoplasm	核质	0.20000	`XP_057784366.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:20926007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:20926016`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	B38,B39,B66,B85,C20,C24,C37,C55,C79,D4
`Chr8:20926311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B129,B81,B84
`Chr8:20926975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B94,C5,C82
`Chr8:20927965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr8:20928526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B105,B41,B45
`Chr8:20929509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,C83
`Chr8:20930498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,C9
`Chr8:20930599`	`TTC`	`T`	2bp_deletion	frameshift_variant	4	B100,B122,B91,C73
`Chr8:20930599`	`TTC`	`T`	2bp_deletion	CDS_variant	4	B100,B122,B91,C73
`Chr8:20930602`	`A`	`AAG`	2bp_insertion	frameshift_variant	4	B100,B122,B91,C73
`Chr8:20930602`	`A`	`AAG`	2bp_insertion	CDS_variant	4	B100,B122,B91,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784366.1

949 aa

474

949

RRM_1

PF00076 RRM_1 20-89 aa PF00076 RRM_1 271-340 aa PF00076 RRM_1 490-550 aa

XP_057784367.1

946 aa

473

946

RRM_1

PF00076 RRM_1 20-89 aa PF00076 RRM_1 268-337 aa PF00076 RRM_1 487-547 aa

XP_057784368.1

939 aa

470

939

RRM_1

PF00076 RRM_1 20-89 aa PF00076 RRM_1 271-340 aa PF00076 RRM_1 490-550 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784366.1`	Pfam	`PF00076`	RRM_1	Domain	20	89	1.2e-63	211.6	RNA recognition motif
`XP_057784366.1`	Pfam	`PF00076`	RRM_1	Domain	271	340	1.2e-63	211.6	RNA recognition motif
`XP_057784366.1`	Pfam	`PF00076`	RRM_1	Domain	490	550	1.2e-63	211.6	RNA recognition motif
`XP_057784367.1`	Pfam	`PF00076`	RRM_1	Domain	20	89	1.1e-63	211.7	RNA recognition motif
`XP_057784367.1`	Pfam	`PF00076`	RRM_1	Domain	268	337	1.1e-63	211.7	RNA recognition motif
`XP_057784367.1`	Pfam	`PF00076`	RRM_1	Domain	487	547	1.1e-63	211.7	RNA recognition motif
`XP_057784368.1`	Pfam	`PF00076`	RRM_1	Domain	20	89	1.1e-63	211.7	RNA recognition motif
`XP_057784368.1`	Pfam	`PF00076`	RRM_1	Domain	271	340	1.1e-63	211.7	RNA recognition motif
`XP_057784368.1`	Pfam	`PF00076`	RRM_1	Domain	490	550	1.1e-63	211.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928383.1
AAAAAGTTGAGAAAAAAGTTAAACTGCTTAATCAGCAAGTTTGTGTTTTAGGGCCAACGGGCCACTATTTATAGATATATATCGTCTAATTTCCTTTTCAAGTAGAAGCACCAATGGGAAAAAACAAGAGCATGAAGGGTGGTGGTGAAAATCAGCAATCTCCTTCTACCATTTTCGTTGCGAATTTGCCATTTTCATTAACTAACGCTCAGTTGGAAGAAGCGTTCAGTGATGTCGGACCAATAAGACGATGCTTTATG...

XM_057928384.1
CGGGCCACTATTTATAGATATATATCGTCTAATTTCCTTTTCAAGTAGAAGCACCAATGGGAAAAAACAAGAGCATGAAGGGTGGTGGTGAAAATCAGCAATCTCCTTCTACCATTTTCGTTGCGAATTTGCCATTTTCATTAACTAACGCTCAGTTGGAAGAAGCGTTCAGTGATGTCGGACCAATAAGACGATGCTTTATGGTTATGAAGAAGGGGTCCACTGAACATCGAGGATTTGGCTATGTTCAATTTGCTGTT...

CDS

3 records

下载 CDS FASTA

LOC131001791
ATGGGAAAAAACAAGAGCATGAAGGGTGGTGGTGAAAATCAGCAATCTCCTTCTACCATTTTCGTTGCGAATTTGCCATTTTCATTAACTAACGCTCAGTTGGAAGAAGCGTTCAGTGATGTCGGACCAATAAGACGATGCTTTATGGTTATGAAGAAGGGGTCCACTGAACATCGAGGATTTGGCTATGTTCAATTTGCTGTTGTTGAAGATGCTAATCGTGCCATTGAGCTGAAAAATGGTTCAACTCTTGGTGGTAG...

Protein

3 records

下载 Protein FASTA

XP_057784366.1
MGKNKSMKGGGENQQSPSTIFVANLPFSLTNAQLEEAFSDVGPIRRCFMVMKKGSTEHRGFGYVQFAVVEDANRAIELKNGSTLGGRKIVAKLATHRAPLEQRRAKENQGLVSQPEEAVQTKDDKAAETAVAEKPDKTPSIKEKGEAREKRKRKDISTATPGEAKISEKQRVAKTVIFGSLLDNDMAEEVHRLAREIGTVCSVTYPLPEGELQHHGLAQDGCKMNASSVLYTSVKSARECVAALHQKEIQGRSVWARQLG...

XP_057784367.1
MGKNKSMKGGGENQQSPSTIFVANLPFSLTNAQLEEAFSDVGPIRRCFMVMKKGSTEHRGFGYVQFAVVEDANRAIELKNGSTLGGRKIVAKLATHRAPLEQRRAKENQGQPEEAVQTKDDKAAETAVAEKPDKTPSIKEKGEAREKRKRKDISTATPGEAKISEKQRVAKTVIFGSLLDNDMAEEVHRLAREIGTVCSVTYPLPEGELQHHGLAQDGCKMNASSVLYTSVKSARECVAALHQKEIQGRSVWARQLGGEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器