当前解析结果
SmilChr08G002279| 统一新 Gene ID | SmilChr08G002279 |
|---|---|
| 名称 | SmilChr08G002279 |
| 描述 | uncharacterized SmilChr08G002279 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 21184472 - 21187654 / - |
| NCBI Gene ID | LOC131001804 |
|---|---|
| GeneID | 131001804 |
| locus_tag | - |
| NCBI Name | LOC131001804 |
| 原始查询 | LOC131001804 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829938]; symbol=AT4G37820; hit=AT4G37820; species=arabidopsis; confidence=weak |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829938]; symbol=AT4G37820; hit=AT4G37820; species=arabidopsis; confidence=weak |
| Arabidopsis | AT4G37820 (AT4G37820)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829938] identity=36.1; qcov=0.191; evalue=4.23e-18; confidence=weak |
| Rice | Os06g0554300- identity=31.1; qcov=0.24; evalue=2.21e-11; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001804 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057784380.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057784380.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057784380.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784380.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784380.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:21184697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:21184839 |
T |
TTG |
2bp_insertion | frameshift_variant | 57 | A10,A14,A15,A20,A22,A23,A25,A7,A8,B10,B109,B119,B13,B130,B135,B16,B17,B18,B23,B26,B28,B37,B44,B48,B52,B58,B6,B61,B66,B74,B79,B8,B81,B84,B85,B88,B91,B95,B97,C10,C18,C27,C28,C33,C34,C37,C38,C53,C56,C60,C62,C7,C73,C8,C82,C9,D3 |
Chr8:21184876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr8:21184975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:21185217 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B115 |
Chr8:21185217 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B115 |
Chr8:21185275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C7 |
Chr8:21185533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,C9 |
Chr8:21185535 |
TCG |
T |
2bp_deletion | frameshift_variant | 8 | A10,B23,B37,B95,C37,C56,D1,D9 |
Chr8:21185724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,C59,C81 |
Chr8:21185743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:21185892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B122,C16,C42 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。