当前解析结果
SmilChr08G002311| 统一新 Gene ID | SmilChr08G002311 |
|---|---|
| 名称 | SmilChr08G002311 |
| 描述 | glycosyltransferase 6-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 21779523 - 21780916 / + |
| NCBI Gene ID | LOC131001834 |
|---|---|
| GeneID | 131001834 |
| locus_tag | - |
| NCBI Name | LOC131001834 |
| 原始查询 | LOC131001834 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyltransferase 6-like |
| 产物 | glycosyltransferase 6-like |
| Arabidopsis | AT4G37690 (AT4G37690)Galactosyl transferase GMA12/MNN10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829924] identity=57.9; qcov=0.937; evalue=7.31e-154; confidence=high |
| Rice | Os02g0723200 (OsGT7)- identity=53.4; qcov=0.948; evalue=1.05e-139; confidence=high |
| GO | GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008378 (galactosyltransferase activity); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF05637 (Glyco_transf_34) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001834 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057784420.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057784420.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784420.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784420.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784420.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:21779820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21779832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21779865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:21779901 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | C21,C44 |
Chr8:21779901 |
G |
GA |
1bp_insertion | CDS_variant | 2 | C21,C44 |
Chr8:21779991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,C14,D10 |
Chr8:21780240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C46 |
Chr8:21780351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr8:21780411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:21780450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B35,C61 |
Chr8:21780519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,B94,C39 |
Chr8:21780532 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784420.1PF05637
Glyco_transf_34 86-334 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784420.1 |
Pfam | PF05637 |
Glyco_transf_34 | Family | 86 | 334 | 3.2e-56 | 191.5 | galactosyl transferase GMA12/MNN10 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。