当前解析结果
SmilChr01G001134| 统一新 Gene ID | SmilChr01G001134 |
|---|---|
| 名称 | SmilChr01G001134 |
| 描述 | uncharacterized SmilChr01G001134 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 23098748 - 23103278 / + |
| NCBI Gene ID | LOC131001840 |
|---|---|
| GeneID | 131001840 |
| locus_tag | - |
| NCBI Name | LOC131001840 |
| 原始查询 | LOC131001840 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | confidence=no_hit |
| 产物 | confidence=no_hit |
| Arabidopsis | -- |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001840 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057784475.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057784475.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057784475.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057784475.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:23098750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr1:23098769 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B28,B29,B43,B8,D11 |
Chr1:23098769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B29,B43,B8,D11 |
Chr1:23098777 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B30,B42,C16,C32,C53 |
Chr1:23098781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,C34 |
Chr1:23098787 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A5,B1,B126,B129,B130,B134,B5,B52,B70,B76,B83,B90,C17,C23,C24,C43,C44,C63,C72,D9 |
Chr1:23098791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B125,B53 |
Chr1:23098803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B43,B47,B8 |
Chr1:23098823 |
C |
T |
EMS_canonical_SNV | stop_gained | 50 | A11,A4,B1,B108,B111,B118,B12,B120,B127,B130,B132,B133,B140,B15,B16,B24,B27,B31,B32,B40,B45,B50,B53,B60,B65,B74,B75,B79,B80,B85,B89,C11,C12,C14,C20,C26,C28,C31,C33,C35,C38,C4,C43,C49,C5,C58,C64,C67,C69,C76 |
Chr1:23098826 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A1,B23,B26,B33,B46,B56,B79,B8,B87,B96,C74,C84 |
Chr1:23098829 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B12,D1 |
Chr1:23098829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,D1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。