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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002319

染色体: Chr08 坐标: 21851885-21857136 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002319
名称SmilChr08G002319
描述telomere repeat-binding factor 2-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向21851885 - 21857136 / +

ID 对照

NCBI Gene IDLOC131001842
GeneID131001842
locus_tag-
NCBI NameLOC131001842
原始查询LOC131001842

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述telomere repeat-binding factor 2-like
产物telomere repeat-binding factor 2-like
ArabidopsisAT5G67580 (TRB2)
Homeodomain-like/winged-helix DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:836894]
identity=51; qcov=0.997; evalue=1.17e-69; confidence=high
RiceOs01g0589300
-
identity=48.2; qcov=0.845; evalue=1.67e-66; confidence=high
GOGO:0000786 (nucleosome); GO:0003691 (double-stranded telomeric DNA binding); GO:0006334 (nucleosome assembly)
KEGG-
PfamPF00249 (Myb_DNA-binding); PF00538 (Linker_histone); PF13921 (Myb_DNA-bind_6)
InterPro-
eggNOG-
NRGeneID:131001842

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057784439.1
2 Chromosome 染色体 0.00000 XP_057784439.1
3 Centromere 着丝粒 0.00000 XP_057784439.1
4 Chromatin 染色质 0.00000 XP_057784439.1
5 Telomere 端粒 0.00000 XP_057784439.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:21853816 G A EMS_canonical_SNV CDS_variant 1 B125
Chr8:21854804 G A EMS_canonical_SNV CDS_variant 3 B66,B8,C65
Chr8:21855187 C T EMS_canonical_SNV CDS_variant 1 B131
Chr8:21855206 G A EMS_canonical_SNV CDS_variant 1 B76
Chr8:21855236 G A EMS_canonical_SNV CDS_variant 3 B27,B52,D10
Chr8:21856297 A AG 1bp_insertion frameshift_variant 9 A11,B26,B61,C40,C76,C77,D11,D2,D8
Chr8:21856749 C T EMS_canonical_SNV CDS_variant 1 B51
Chr8:21856757 G A EMS_canonical_SNV CDS_variant 1 B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784439.1
307 aa
N
1
154
307
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-178 aa
XP_057784440.1
307 aa
N
1
154
307
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-178 aa
XP_057784441.1
298 aa
N
1
149
298
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-182 aa
XP_057784442.1
298 aa
N
1
149
298
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-182 aa
XP_057784443.1
297 aa
N
1
148
297
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-182 aa
XP_057784444.1
297 aa
N
1
148
297
Myb_DNA-binding
Myb_DNA-bind_6
Linker_histone
C
PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 124-182 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784439.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784439.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 7.4e-06 26.8 Myb-like DNA-binding domain
XP_057784439.1 Pfam PF00538 Linker_histone Domain 124 178 1e-11 45.6 linker histone H1 and H5 family
XP_057784440.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784440.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 7.4e-06 26.8 Myb-like DNA-binding domain
XP_057784440.1 Pfam PF00538 Linker_histone Domain 124 178 1e-11 45.6 linker histone H1 and H5 family
XP_057784441.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784441.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 4.7e-06 27.4 Myb-like DNA-binding domain
XP_057784441.1 Pfam PF00538 Linker_histone Domain 124 182 3.7e-13 50.2 linker histone H1 and H5 family
XP_057784442.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784442.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 4.7e-06 27.4 Myb-like DNA-binding domain
XP_057784442.1 Pfam PF00538 Linker_histone Domain 124 182 3.7e-13 50.2 linker histone H1 and H5 family
XP_057784443.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784443.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 4.6e-06 27.4 Myb-like DNA-binding domain
XP_057784443.1 Pfam PF00538 Linker_histone Domain 124 182 3.7e-13 50.2 linker histone H1 and H5 family
XP_057784444.1 Pfam PF00249 Myb_DNA-binding Domain 5 56 5.3e-09 36.8 Myb-like DNA-binding domain
XP_057784444.1 Pfam PF13921 Myb_DNA-bind_6 Domain 8 57 4.6e-06 27.4 Myb-like DNA-binding domain
XP_057784444.1 Pfam PF00538 Linker_histone Domain 124 182 3.7e-13 50.2 linker histone H1 and H5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057928461.1
TAAGCATGCTTGGAAAAAAGAAATGGTTTCGTATGTAAGCTGCAGATGAAAATCGAGTGTTGTTATAGGCATAGGCATAGGCATAGCCCTCAGCAGAGTGTGTGTATAGCTGGCTGATTCTTCCAGAACAAGAAACTATGCGACGAATAACCACAAACTGCCATCTAAACCGGGAAATTACTCTCTAATTCTTCGTATTTGCGGTATCCTGCCAATTAGGGCTTCAATCATTCTCAATGTGTTGATATTCAATTACATAA...
XM_057928456.1
AAGCATGCTTGGAAAAAAGAAATGGTTTCGTATGTAAGCTGCAGATGAAAATCGAGTGTTGTTATAGGCATAGGCATAGGCATAGCCCTCAGCAGAGTGTGTGTATAGCTGGCTGATTCTTCCAGAACAAGAAACTATGCGACGAATAACCACAAACTGCCATCTAAACCGGGAAATTACTCTCTAATTCTTCGTATTTGCGGTATCCTGCCAATTAGGGCTTCAATCATTCTCAATGTGTTGATATTCAATTACATAAA...

CDS

6 records

下载 CDS FASTA
LOC131001842
ATGGGTGCCCCTAAGCAGAAGTGGACATCAGAAGAAGAAGCTGCTCTTAAAGCTGGCATTCAAAAATATGGAATAGGAAAATGGAGTACAATACTTAAAGATCCAGAGTTCAGCACAGTCTTGCGGTCACGCTCTAATGTGGACCTTAAGGATAAATGGAGAAATTTGAATTGCATGGCAAATGGTCTTGGATCCCGGCATAGGGCTAGGGTTTCAATCAAAAGCAGCCAGCTTATCACCAAGCAAGATGAAGACACTAC...
LOC131001842
ATGGGTGCCCCTAAGCAGAAGTGGACATCAGAAGAAGAAGCTGCTCTTAAAGCTGGCATTCAAAAATATGGAATAGGAAAATGGAGTACAATACTTAAAGATCCAGAGTTCAGCACAGTCTTGCGGTCACGCTCTAATGTGGACCTTAAGGATAAATGGAGAAATTTGAATTGCATGGCAAATGGTCTTGGATCCCGGCATAGGGCTAGGGTTTCAATCAAAAGCAGCCAGCTTATCACCAAGCAAGATGAAGACACTAC...

Protein

6 records

下载 Protein FASTA
XP_057784439.1
MGAPKQKWTSEEEAALKAGIQKYGIGKWSTILKDPEFSTVLRSRSNVDLKDKWRNLNCMANGLGSRHRARVSIKSSQLITKQDEDTTSSSMVVYKDMEVLGITSLAASNEISQDAISKKKISRLDDVILEAITKLKEPRGSSRPAINQYIEDNYSAPPELERTLAANLKILTENGRLIKEISERPGKKRVKNQYRIAPKLITFGAEEEAKLLVENGGGAKKDPFQAERSGVVLLSKAKIDAELEKMKSMSAEEAAAAAAR...
XP_057784440.1
MGAPKQKWTSEEEAALKAGIQKYGIGKWSTILKDPEFSTVLRSRSNVDLKDKWRNLNCMANGLGSRHRARVSIKSSQLITKQDEDTTSSSMVVYKDMEVLGITSLAASNEISQDAISKKKISRLDDVILEAITKLKEPRGSSRPAINQYIEDNYSAPPELERTLAANLKILTENGRLIKEISERPGKKRVKNQYRIAPKLITFGAEEEAKLLVENGGGAKKDPFQAERSGVVLLSKAKIDAELEKMKSMSAEEAAAAAAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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