当前解析结果
SmilChr08G002324| 统一新 Gene ID | SmilChr08G002324 |
|---|---|
| 名称 | SmilChr08G002324 |
| 描述 | uncharacterized SmilChr08G002324 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 21920330 - 21925464 / + |
| NCBI Gene ID | LOC131001847 |
|---|---|
| GeneID | 131001847 |
| locus_tag | - |
| NCBI Name | LOC131001847 |
| 原始查询 | LOC131001847 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyl hydrolase family protein 43 [Source:NCBI gene (formerly Entrezgene);Acc:824150]; symbol=AT3G49880; hit=AT3G49880; species=arabidopsis; confidence=high |
| 产物 | glycosyl hydrolase family protein 43 [Source:NCBI gene (formerly Entrezgene);Acc:824150]; symbol=AT3G49880; hit=AT3G49880; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G49880 (AT3G49880)glycosyl hydrolase family protein 43 [Source:NCBI gene (formerly Entrezgene);Acc:824150] identity=75.7; qcov=0.933; evalue=0; confidence=high |
| Rice | Os12g0406100- identity=68.7; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF04616 (Glyco_hydro_43) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001847 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057784451.1 |
| 2 | Golgi stack | 高尔基堆 | 0.60000 | XP_057784451.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057784451.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784451.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784451.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:21921321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C81 |
Chr8:21921616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr8:21921696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr8:21924510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:21924552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21924671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr8:21924703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B16,B45,B59 |
Chr8:21924804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:21924832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:21924906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,C12,C59 |
Chr8:21924928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21924972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,A23,A3,B131,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784451.1PF04616
Glyco_hydro_43 199-383 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784451.1 |
Pfam | PF04616 |
Glyco_hydro_43 | Repeat | 199 | 383 | 6.5e-19 | 69.1 | Glycosyl hydrolases family 43 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。