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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002339

染色体: Chr08 坐标: 22077412-22082711 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002339
名称SmilChr08G002339
描述putative pentatricopeptide repeat-containing protein At1g16830
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向22077412 - 22082711 / +

ID 对照

NCBI Gene IDLOC131001859
GeneID131001859
locus_tag-
NCBI NameLOC131001859
原始查询LOC131001859

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g16830
产物putative pentatricopeptide repeat-containing protein At1g16830
ArabidopsisAT1G16830 (AT1G16830)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838254]
identity=39.6; qcov=0.847; evalue=3.48e-142; confidence=medium
RiceOs10g0578500
-
identity=37.4; qcov=0.827; evalue=5.07e-131; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131001859

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057784466.1
2 Chloroplast 叶绿体 0.20000 XP_057784466.1
3 Nucleus 细胞核 0.00000 XP_057784466.1
4 Chromosome 染色体 0.00000 XP_057784466.1
5 Centromere 着丝粒 0.00000 XP_057784466.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:22078292 G A EMS_canonical_SNV CDS_variant 3 A15,B76,C46
Chr8:22078692 C T EMS_canonical_SNV CDS_variant 2 B81,B88
Chr8:22078847 C T EMS_canonical_SNV CDS_variant 1 C12
Chr8:22078848 G A EMS_canonical_SNV CDS_variant 1 B17
Chr8:22079121 G A EMS_canonical_SNV CDS_variant 2 B81,B88
Chr8:22079817 C T EMS_canonical_SNV CDS_variant 1 C12
Chr8:22079895 G A EMS_canonical_SNV CDS_variant 4 B105,B36,B48,D2
Chr8:22079910 G A EMS_canonical_SNV CDS_variant 1 B17
Chr8:22079941 G A EMS_canonical_SNV CDS_variant 1 B124
Chr8:22079945 G A EMS_canonical_SNV CDS_variant 1 C12
Chr8:22080070 C T EMS_canonical_SNV CDS_variant 5 B105,B25,B36,B48,D2
Chr8:22080235 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784466.1
659 aa
N
1
330
659
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR
C
PF01535 PPR 200-227 aa PF01535 PPR 234-263 aa PF13041 PPR_2 234-279 aa PF13812 PPR_3 255-312 aa PF12854 PPR_1 262-294 aa PF13041 PPR_2 267-312 aa PF01535 PPR 269-298 aa PF23276 TPR_24 271-362 aa PF01535 PPR 303-333 aa PF13812 PPR_3 324-382 aa PF13041 PPR_2 335-381 aa PF01535 PPR 338-365 aa PF13041 PPR_2 402-451 aa PF01535 PPR 405-435 aa PF01535 PPR 445-463 aa PF01535 PPR 479-499 aa PF23276 TPR_24 481-586 aa PF13812 PPR_3 496-555 aa PF13041 PPR_2 509-557 aa PF01535 PPR 511-540 aa PF12854 PPR_1 540-571 aa PF01535 PPR 547-575 aa
XP_057784467.1
659 aa
N
1
330
659
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR
C
PF01535 PPR 200-227 aa PF01535 PPR 234-263 aa PF13041 PPR_2 234-279 aa PF13812 PPR_3 255-312 aa PF12854 PPR_1 262-294 aa PF13041 PPR_2 267-312 aa PF01535 PPR 269-298 aa PF23276 TPR_24 271-362 aa PF01535 PPR 303-333 aa PF13812 PPR_3 324-382 aa PF13041 PPR_2 335-381 aa PF01535 PPR 338-365 aa PF13041 PPR_2 402-451 aa PF01535 PPR 405-435 aa PF01535 PPR 445-463 aa PF01535 PPR 479-499 aa PF23276 TPR_24 481-586 aa PF13812 PPR_3 496-555 aa PF13041 PPR_2 509-557 aa PF01535 PPR 511-540 aa PF12854 PPR_1 540-571 aa PF01535 PPR 547-575 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784466.1 Pfam PF01535 PPR Repeat 200 227 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF01535 PPR Repeat 234 263 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF13041 PPR_2 Repeat 234 279 7.7e-74 244.3 PPR repeat family
XP_057784466.1 Pfam PF13812 PPR_3 Repeat 255 312 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784466.1 Pfam PF12854 PPR_1 Repeat 262 294 3.6e-57 190.5 PPR repeat
XP_057784466.1 Pfam PF13041 PPR_2 Repeat 267 312 7.7e-74 244.3 PPR repeat family
XP_057784466.1 Pfam PF01535 PPR Repeat 269 298 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF23276 TPR_24 Repeat 271 362 9.7e-24 84.5 Pentatricopeptide repeat-containing protein
XP_057784466.1 Pfam PF01535 PPR Repeat 303 333 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF13812 PPR_3 Repeat 324 382 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784466.1 Pfam PF13041 PPR_2 Repeat 335 381 7.7e-74 244.3 PPR repeat family
XP_057784466.1 Pfam PF01535 PPR Repeat 338 365 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF13041 PPR_2 Repeat 402 451 7.7e-74 244.3 PPR repeat family
XP_057784466.1 Pfam PF01535 PPR Repeat 405 435 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF01535 PPR Repeat 445 463 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF01535 PPR Repeat 479 499 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF23276 TPR_24 Repeat 481 586 9.7e-24 84.5 Pentatricopeptide repeat-containing protein
XP_057784466.1 Pfam PF13812 PPR_3 Repeat 496 555 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784466.1 Pfam PF13041 PPR_2 Repeat 509 557 7.7e-74 244.3 PPR repeat family
XP_057784466.1 Pfam PF01535 PPR Repeat 511 540 1.2e-54 179.5 PPR repeat
XP_057784466.1 Pfam PF12854 PPR_1 Repeat 540 571 3.6e-57 190.5 PPR repeat
XP_057784466.1 Pfam PF01535 PPR Repeat 547 575 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF01535 PPR Repeat 200 227 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF01535 PPR Repeat 234 263 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF13041 PPR_2 Repeat 234 279 7.7e-74 244.3 PPR repeat family
XP_057784467.1 Pfam PF13812 PPR_3 Repeat 255 312 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784467.1 Pfam PF12854 PPR_1 Repeat 262 294 3.6e-57 190.5 PPR repeat
XP_057784467.1 Pfam PF13041 PPR_2 Repeat 267 312 7.7e-74 244.3 PPR repeat family
XP_057784467.1 Pfam PF01535 PPR Repeat 269 298 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF23276 TPR_24 Repeat 271 362 9.7e-24 84.5 Pentatricopeptide repeat-containing protein
XP_057784467.1 Pfam PF01535 PPR Repeat 303 333 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF13812 PPR_3 Repeat 324 382 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784467.1 Pfam PF13041 PPR_2 Repeat 335 381 7.7e-74 244.3 PPR repeat family
XP_057784467.1 Pfam PF01535 PPR Repeat 338 365 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF13041 PPR_2 Repeat 402 451 7.7e-74 244.3 PPR repeat family
XP_057784467.1 Pfam PF01535 PPR Repeat 405 435 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF01535 PPR Repeat 445 463 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF01535 PPR Repeat 479 499 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF23276 TPR_24 Repeat 481 586 9.7e-24 84.5 Pentatricopeptide repeat-containing protein
XP_057784467.1 Pfam PF13812 PPR_3 Repeat 496 555 1e-26 93.5 Pentatricopeptide repeat domain
XP_057784467.1 Pfam PF13041 PPR_2 Repeat 509 557 7.7e-74 244.3 PPR repeat family
XP_057784467.1 Pfam PF01535 PPR Repeat 511 540 1.2e-54 179.5 PPR repeat
XP_057784467.1 Pfam PF12854 PPR_1 Repeat 540 571 3.6e-57 190.5 PPR repeat
XP_057784467.1 Pfam PF01535 PPR Repeat 547 575 1.2e-54 179.5 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928484.1
GAAGACTAATCCATGGCCCAAACTTCTCAGTCCAACTTGATAGTTATATAAAATTCAGTAGATTTTTTTTCTTCTCTCCGCCGTCTTCTTTCTAACTCTCTGATTCTCGCTAGCCGTCGCCCGGACCGACCCGCCTCCTCCGGCAGCAGCGCTGCAAACCTGCATCAGTCCGTCCAGTCCAGCTGCACCGTAGCAGCAGTCAGAAGTTTCCCAGACTACTGCCTCCCACTGATGTTGTCACCCTAGCAATCGGTTATATT...
XM_057928483.1
CATGGCCCAAACTTCTCAGTCCAACTTGATAGTTATATAAAATTCAGTAGATTTTTTTTCTTCTCTCCGCCGTCTTCTTTCTAACTCTCTGATTCTCGCTAGCCGTCGCCCGGACCGACCCGCCTCCTCCGGCAGCAGCGCTGCAAACCTGCATCAGTCCGTCCAGTCCAGCTGCACCGTAGCAGCAGTCAGAAGTTTCCCAGACTACTGCCTCCCACTGATGTTGTCACCCTAGCAATCGGTTATATTTCCGCCTGCAA...

CDS

2 records

下载 CDS FASTA
LOC131001859
ATGATTCAATTTATACGTAGACGGAGATTCAAATTTCCATCCAAATCTCATTCTTTTGCATTAGTACACCAACTAGCTTCACCAATTAACTGCCCCAGAGGTACAAATCCTGAAAAATTGGCCTTCAAACCTTCTATAAATCAAGAGCAACTCAAGCTGGGTGCTAAAGCCACCTTTCTCTCTCCTCAAACCGTGTTGACCACTCTGCAAAATTGCCCTTCTGATTTAGTTGCTCTGAGTTTTTTCCTATGGTGTGCCCG...
LOC131001859
ATGATTCAATTTATACGTAGACGGAGATTCAAATTTCCATCCAAATCTCATTCTTTTGCATTAGTACACCAACTAGCTTCACCAATTAACTGCCCCAGAGGTACAAATCCTGAAAAATTGGCCTTCAAACCTTCTATAAATCAAGAGCAACTCAAGCTGGGTGCTAAAGCCACCTTTCTCTCTCCTCAAACCGTGTTGACCACTCTGCAAAATTGCCCTTCTGATTTAGTTGCTCTGAGTTTTTTCCTATGGTGTGCCCG...

Protein

2 records

下载 Protein FASTA
XP_057784466.1
MIQFIRRRRFKFPSKSHSFALVHQLASPINCPRGTNPEKLAFKPSINQEQLKLGAKATFLSPQTVLTTLQNCPSDLVALSFFLWCARQPNYFHDKPGFHHMVGVVSKLTQRCGTVRDIIEELESIGCFTKAQTFLLLMRIYWRGAMYDMVLEAFEVMCGYGYVPNTYVRNIIVDVLFKIGRVDAALSFLKGTPAPNFLSFNISICNLCKLNEVDKVKSVFRCMLLRGYYMNPETYGLVLNCFCKFGRLEEASQLLGMMVV...
XP_057784467.1
MIQFIRRRRFKFPSKSHSFALVHQLASPINCPRGTNPEKLAFKPSINQEQLKLGAKATFLSPQTVLTTLQNCPSDLVALSFFLWCARQPNYFHDKPGFHHMVGVVSKLTQRCGTVRDIIEELESIGCFTKAQTFLLLMRIYWRGAMYDMVLEAFEVMCGYGYVPNTYVRNIIVDVLFKIGRVDAALSFLKGTPAPNFLSFNISICNLCKLNEVDKVKSVFRCMLLRGYYMNPETYGLVLNCFCKFGRLEEASQLLGMMVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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