当前解析结果
SmilChr08G002354| 统一新 Gene ID | SmilChr08G002354 |
|---|---|
| 名称 | SmilChr08G002354 |
| 描述 | uncharacterized SmilChr08G002354 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22273256 - 22273940 / + |
| NCBI Gene ID | LOC131001876 |
|---|---|
| GeneID | 131001876 |
| locus_tag | - |
| NCBI Name | LOC131001876 |
| 原始查询 | LOC131001876 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:833636]; symbol=AT5G36710; hit=AT5G36800; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:833636]; symbol=AT5G36710; hit=AT5G36800; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G36800 (AT5G36710)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:833636] identity=57.6; qcov=1.03; evalue=2.91e-65; confidence=high |
| Rice | Os04g0496300- identity=52.9; qcov=0.955; evalue=3.6e-44; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001876 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.40000 | XP_057784490.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057784490.1 |
| 3 | Endosome | 内体 | 0.40000 | XP_057784490.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057784490.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057784490.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22273508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:22273548 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | A7 |
Chr8:22273548 |
AC |
A |
1bp_deletion | CDS_variant | 1 | A7 |
Chr8:22273604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B7,B80 |
Chr8:22273658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B47,B55,C61 |
Chr8:22273730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B60,B87 |
Chr8:22273762 |
A |
AG |
1bp_insertion | frameshift_variant | 48 | A13,A20,A5,B103,B105,B109,B111,B118,B12,B125,B13,B134,B139,B15,B18,B19,B21,B22,B24,B34,B36,B41,B42,B43,B44,B46,B56,B57,B62,B7,B73,B80,B82,B96,C11,C15,C16,C20,C39,C43,C44,C53,C69,C71,C73,C79,C87,D11 |
Chr8:22273766 |
AAT |
A |
2bp_deletion | frameshift_variant | 48 | A13,A20,A5,B103,B105,B109,B111,B118,B12,B125,B13,B134,B139,B15,B18,B19,B21,B22,B24,B34,B36,B41,B42,B43,B44,B46,B56,B57,B62,B7,B73,B80,B82,B96,C11,C15,C16,C20,C39,C43,C44,C53,C69,C71,C73,C79,C87,D11 |
Chr8:22273770 |
C |
CG |
1bp_insertion | frameshift_variant | 48 | A13,A20,A5,B103,B105,B109,B111,B118,B12,B125,B13,B134,B139,B15,B18,B19,B21,B22,B24,B34,B36,B41,B42,B43,B44,B46,B56,B57,B62,B7,B73,B80,B82,B96,C11,C15,C16,C20,C39,C43,C44,C53,C69,C71,C73,C79,C87,D11 |
Chr8:22273810 |
TC |
T |
1bp_deletion | frameshift_variant | 87 | A1,A16,A2,A23,A3,A8,B10,B107,B108,B110,B112,B113,B120,B123,B126,B127,B128,B133,B134,B135,B14,B18,B19,B22,B23,B24,B28,B31,B33,B35,B37,B39,B4,B42,B43,B44,B54,B60,B64,B65,B70,B71,B72,B77,B87,B89,B9,B90,B92,B94,B95,B97,B99,C1,C12,C17,C18,C19,C2,C20,C22,C25,C27,C3,C4,C40,C41,C47,C48,C49,C5,C53,C55,C58,C60,C61,C62,C74,C76,C83,C87,C9,D2,D3,D4,D7,D8 |
Chr8:22273826 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B90 |
Chr8:22273826 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B90 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。