Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002362`

染色体: Chr08 坐标: 22383561-22392713 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002362`
名称	SmilChr08G002362
描述	type II inositol polyphosphate 5-phosphatase 15-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22383561 - 22392713 / `-`

ID 对照

NCBI Gene ID	`LOC131001885`
GeneID	`131001885`
locus_tag	`-`
NCBI Name	`LOC131001885`
原始查询	`LOC131001885`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type II inositol polyphosphate 5-phosphatase 15-like
产物	type II inositol polyphosphate 5-phosphatase 15-like
Arabidopsis	`AT1G65580` (FRA3) Endonuclease/exonuclease/phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842869] identity=60.7; qcov=0.964; evalue=0; confidence=high
Rice	`Os08g0524100` - identity=56.2; qcov=0.937; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016791 (phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF03372 (Exo_endo_phos); PF22669 (Exo_endo_phos2); PF23754 (Beta-prop_IP5PC_F); PF23755 (Ig-like_IP5PC_F)
InterPro	-
eggNOG	-
NR	GeneID:131001885

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.60000	`XP_057784499.1`
2	Cytoplasm	细胞质	0.60000	`XP_057784500.1`
3	Cytosol	细胞质基质	0.60000	`XP_057784500.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057784499.1`
5	Nucleus	细胞核	0.00000	`XP_057784499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22386074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22389112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22389243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22391895`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B63
`Chr8:22391895`	`GC`	`G`	1bp_deletion	CDS_variant	1	B63
`Chr8:22392233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:22392340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22392484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784499.1

1167 aa

584

1167

Beta-prop_IP5PC_F

Exo_endo_phos

Exo_endo_phos2

Ig-like_IP5PC_F

PF23754 Beta-prop_IP5PC_F 147-543 aa PF03372 Exo_endo_phos 577-943 aa PF22669 Exo_endo_phos2 577-947 aa PF23755 Ig-like_IP5PC_F 986-1121 aa

XP_057784500.1

1133 aa

566

1133

Beta-prop_IP5PC_F

Exo_endo_phos

Exo_endo_phos2

Ig-like_IP5PC_F

PF23754 Beta-prop_IP5PC_F 147-543 aa PF03372 Exo_endo_phos 577-909 aa PF22669 Exo_endo_phos2 577-913 aa PF23755 Ig-like_IP5PC_F 952-1087 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784499.1`	Pfam	`PF23754`	Beta-prop_IP5PC_F	Repeat	147	543	6.6e-163	542.9	IP5P C-F beta-propeller
`XP_057784499.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	577	943	1.1e-07	32.6	Endonuclease/Exonuclease/phosphatase family
`XP_057784499.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	577	947	1.6e-65	222.2	Endonuclease/Exonuclease/phosphatase family 2
`XP_057784499.1`	Pfam	`PF23755`	Ig-like_IP5PC_F	Domain	986	1121	1.4e-66	223.2	IP5P C-F Ig-like domain
`XP_057784500.1`	Pfam	`PF23754`	Beta-prop_IP5PC_F	Repeat	147	543	6.2e-163	543.0	IP5P C-F beta-propeller
`XP_057784500.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	577	909	4.2e-08	33.9	Endonuclease/Exonuclease/phosphatase family
`XP_057784500.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	577	913	2.7e-67	228.1	Endonuclease/Exonuclease/phosphatase family 2
`XP_057784500.1`	Pfam	`PF23755`	Ig-like_IP5PC_F	Domain	952	1087	1.3e-66	223.2	IP5P C-F Ig-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928517.1
TAATTTTATATTATTATATCGTGATGCAAAAACAGAAATTAACAATAAATCGAATTCTCCGCTTCACTCGTCTCTCTTTCTCTAAAATCTCGAAACAGAATCTCCAAATTCTCCGGCGAAACCCCTAAATCTCCGTCATGGACGACCAAAACGACGACGCTTTGACCCGCCGCACCAATTTCCGCACTTACTCGGAGAATTTCGCCGTCCGCTCCGATTCCGACGACGAGTACTCCACCGGCACCGGCGCCGGCGCCGGA...

XM_057928516.1
TAATTTTATATTATTATATCGTGATGCAAAAACAGAAATTAACAATAAATCGAATTCTCCGCTTCACTCGTCTCTCTTTCTCTAAAATCTCGAAACAGAATCTCCAAATTCTCCGGCGAAACCCCTAAATCTCCGTCATGGACGACCAAAACGACGACGCTTTGACCCGCCGCACCAATTTCCGCACTTACTCGGAGAATTTCGCCGTCCGCTCCGATTCCGACGACGAGTACTCCACCGGCACCGGCGCCGGCGCCGGA...

CDS

2 records

下载 CDS FASTA

LOC131001885
ATGGACGACCAAAACGACGACGCTTTGACCCGCCGCACCAATTTCCGCACTTACTCGGAGAATTTCGCCGTCCGCTCCGATTCCGACGACGAGTACTCCACCGGCACCGGCGCCGGCGCCGGAGAAGTCGCCTCCGGGAAGGTGGGAATCGACGAGGCGGCATTGAATTACCAGAAGGCGCCCAGAGTCTTCGACCGTTTCTACAACTCGTCGTCGGAGGAGGAAGATGAGGATGAGGTCAGTAGCTCTTCGAATTACCA...

Protein

2 records

下载 Protein FASTA

XP_057784499.1
MDDQNDDALTRRTNFRTYSENFAVRSDSDDEYSTGTGAGAGEVASGKVGIDEAALNYQKAPRVFDRFYNSSSEEEDEDEVSSSSNYQRRLDYMLQFLDRKLSTSSSPDQPLPEHTASGGGVGIFRPPVRAPVHPNRPPSIEVRPHPLRETQVGRFLRRIVTVDDGDGPQMWAGSESGIRVWDLKNDIYSGGKEGEEEGTVRYWESAPVTASALCLVGDGGNRVVWSGHKDGRIMCWKMMDFSSASGRGTGVNRNGFQEVF...

XP_057784500.1
MDDQNDDALTRRTNFRTYSENFAVRSDSDDEYSTGTGAGAGEVASGKVGIDEAALNYQKAPRVFDRFYNSSSEEEDEDEVSSSSNYQRRLDYMLQFLDRKLSTSSSPDQPLPEHTASGGGVGIFRPPVRAPVHPNRPPSIEVRPHPLRETQVGRFLRRIVTVDDGDGPQMWAGSESGIRVWDLKNDIYSGGKEGEEEGTVRYWESAPVTASALCLVGDGGNRVVWSGHKDGRIMCWKMMDFSSASGRGTGVNRNGFQEVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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