Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002391`

染色体: Chr08 坐标: 22680295-22683738 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002391`
名称	SmilChr08G002391
描述	uncharacterized SmilChr08G002391
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22680295 - 22683738 / `+`

ID 对照

NCBI Gene ID	`LOC131001911`
GeneID	`131001911`
locus_tag	`-`
NCBI Name	`LOC131001911`
原始查询	`LOC131001911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	complex 1 protein, LYR family protein [Source:NCBI gene (formerly Entrezgene);Acc:835271]; symbol=AT5G51960; hit=AT5G51960; species=arabidopsis; confidence=medium
产物	complex 1 protein, LYR family protein [Source:NCBI gene (formerly Entrezgene);Acc:835271]; symbol=AT5G51960; hit=AT5G51960; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G51960` (AT5G51960) complex 1 protein, LYR family protein [Source:NCBI gene (formerly Entrezgene);Acc:835271] identity=65.3; qcov=0.891; evalue=4.98e-41; confidence=medium
Rice	`Os11g0133900` - identity=63.7; qcov=0.927; evalue=1.63e-37; confidence=medium
GO	-
KEGG	-
Pfam	PF05347 (Complex1_LYR); PF13233 (Complex1_LYR_2)
InterPro	-
eggNOG	-
NR	GeneID:131001911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057784538.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057784538.1`
3	Nucleus	细胞核	0.00000	`XP_057784538.1`
4	Chromosome	染色体	0.00000	`XP_057784538.1`
5	Centromere	着丝粒	0.00000	`XP_057784538.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22681022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:22682723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B57,C14,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784538.1

110 aa

110

Complex1_LYR_2

Complex1_LYR

PF13233 Complex1_LYR_2 13-103 aa PF05347 Complex1_LYR 14-57 aa

XP_057784539.1

110 aa

110

Complex1_LYR_2

Complex1_LYR

PF13233 Complex1_LYR_2 13-103 aa PF05347 Complex1_LYR 14-57 aa

XP_057784540.1

110 aa

110

Complex1_LYR_2

Complex1_LYR

PF13233 Complex1_LYR_2 13-103 aa PF05347 Complex1_LYR 14-57 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784538.1`	Pfam	`PF13233`	Complex1_LYR_2	Family	13	103	9.9e-12	46.1	Complex1_LYR-like
`XP_057784538.1`	Pfam	`PF05347`	Complex1_LYR	Family	14	57	3e-07	31.0	Complex 1 protein (LYR family)
`XP_057784539.1`	Pfam	`PF13233`	Complex1_LYR_2	Family	13	103	9.9e-12	46.1	Complex1_LYR-like
`XP_057784539.1`	Pfam	`PF05347`	Complex1_LYR	Family	14	57	3e-07	31.0	Complex 1 protein (LYR family)
`XP_057784540.1`	Pfam	`PF13233`	Complex1_LYR_2	Family	13	103	9.9e-12	46.1	Complex1_LYR-like
`XP_057784540.1`	Pfam	`PF05347`	Complex1_LYR	Family	14	57	3e-07	31.0	Complex 1 protein (LYR family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928556.1
CCAATAATCCAACGCACCGGCCGCCACGGTGCCATCGGATCAGCTGACCAGTCGTCGGTCGCCCAGCCTCGTTGCCCCATTCCGACGCCTAGGCCAGTCGGCGTAGCCGCGCAGCGCCAACCTCGCCCTGTCCAGATTCTCCAGTCTCCACCCTCGCGGGTTGCGGCCTCGCCAATCCACAAAATTTTGGCGAGAGAGAAAGAAGAAGAAGAGTGAGCAAACAAAATGAGTTCATCAATGGAAGTCGCGAATACAGCAGC...

XM_057928557.1
TTAAAGATCGGTGTCGGGTAGGTTAGTACAATTAGCTAAATATCGGGTCGAGATCCGACAAAATCAGGTTGGATATCCAACCCGGACCGGATGTACACCCGTCTAACTGCAAGTAAGAATAAACAAATCCATTTCTGAATTTCTGCAACTTAGAAATTTTGGCGAGAGAGAAAGAAGAAGAAGAGTGAGCAAACAAAATGAGTTCATCAATGGAAGTCGCGAATACAGCAGCAAAAGCGGCGTACAGAAGTCTTCTTCGA...

CDS

3 records

下载 CDS FASTA

LOC131001911
ATGAGTTCATCAATGGAAGTCGCGAATACAGCAGCAAAAGCGGCGTACAGAAGTCTTCTTCGAGCGGTGAGGAAACATGTCGGGAAAGAAAACCACAAATCCCATTTCACGGATTTCATCAAACACGAATTCAGAAGAAATCTTAGCTCCCAAGACCCACAAAATCTGAAGCTCGCGCAGGATTACACTGTCTATCTCAACAGCGTACACCATCAGAAGGAATTGCTCTTCTCGTACAATATCGCAGTGGATAGGTCTGC...

Protein

3 records

下载 Protein FASTA

XP_057784538.1
MSSSMEVANTAAKAAYRSLLRAVRKHVGKENHKSHFTDFIKHEFRRNLSSQDPQNLKLAQDYTVYLNSVHHQKELLFSYNIAVDRSAEMKKVLGKSAASVGLQLPEVYQA

XP_057784539.1
MSSSMEVANTAAKAAYRSLLRAVRKHVGKENHKSHFTDFIKHEFRRNLSSQDPQNLKLAQDYTVYLNSVHHQKELLFSYNIAVDRSAEMKKVLGKSAASVGLQLPEVYQA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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