当前解析结果
SmilChr08G002397| 统一新 Gene ID | SmilChr08G002397 |
|---|---|
| 名称 | SmilChr08G002397 |
| 描述 | LOB domain-containing protein 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22752417 - 22756783 / + |
| NCBI Gene ID | LOC131001915 |
|---|---|
| GeneID | 131001915 |
| locus_tag | - |
| NCBI Name | LOC131001915 |
| 原始查询 | LOC131001915 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LOB domain-containing protein 1-like |
| 产物 | LOB domain-containing protein 1-like |
| Arabidopsis | AT1G07900 (LBD1)LOB domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:837305] identity=53.75; qcov=0.824; evalue=6.18e-55; confidence=high |
| Rice | Os03g0287400- identity=62.7; qcov=0.741; evalue=2.25e-51; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03195 (LOB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001915 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22752472 |
A |
AT |
1bp_insertion | frameshift_variant | 10 | A10,B34,B45,B96,C53,C54,C6,C78,C84,C85 |
Chr8:22752477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:22752479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:22752551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B135,C61,C62 |
Chr8:22752594 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | B103 |
Chr8:22752594 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | B103 |
Chr8:22756353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B140,B95,C4,C46 |
Chr8:22756408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B64 |
Chr8:22756460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C82 |
Chr8:22756466 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | A22,B58 |
Chr8:22756466 |
CT |
C |
1bp_deletion | CDS_variant | 2 | A22,B58 |
Chr8:22756491 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784544.1PF03195
LOB 35-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784544.1 |
Pfam | PF03195 |
LOB | Family | 35 | 131 | 5.4e-39 | 133.5 | Lateral organ boundaries (LOB) domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。